Showing : Cancer • reset
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4
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limma design question
Microarray Cancer limma Microarray Cancer limma
updated 16.9 years ago by 68k • written 16.9 years ago by ▴ 330
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2
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1.5k
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Processing data from Illumina HumanCNV370-Quad chips
Cancer Breast Cancer Breast
16.9 years ago Steven McKinney ▴ 310
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4
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1.5k
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Course material for "Using Bioconductor for ChIP-seq experiments"
Sequencing Cancer BSgenome annotate Biostrings BSgenome Sequencing Cancer BSgenome
updated 16.9 years ago by ▴ 10 • written 16.9 years ago by ★ 1.6k
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1.5k
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Talk & Poster Call - qPCR 2009 Event
SNP qPCR Normalization Visualization Regression Cancer probe PROcess microRNA SNP qPCR
16.9 years ago qPCR Platform - the reference in real-t… ▴ 170
0
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2
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1.4k
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applying coxfilter after LIMMA
Survival Cancer limma Survival Cancer limma
updated 16.9 years ago by 68k • written 16.9 years ago by ▴ 330
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3
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2.5k
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gene expression data followup
Survival Cancer Survival Cancer
updated 16.9 years ago by 68k • written 16.9 years ago by ▴ 330
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1.4k
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Postdoctoral scientist/programmer positions
Sequencing Cancer Sequencing Cancer
16.9 years ago Crispin Miller ★ 1.1k
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4
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2.7k
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biomaRt get exon intron structure of a transcrit
Cancer biomaRt Cancer biomaRt
16.9 years ago Shi, Tao ▴ 720
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2
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1.0k
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Colourful way of visualising differential analysis results
Microarray Cancer limma Microarray Cancer limma
updated 16.9 years ago by ▴ 220 • written 16.9 years ago by ★ 1.9k
0
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4
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1.9k
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CDF issue
Annotation Cancer cdf annotate affy Annotation Cancer cdf annotate affy
17.0 years ago • updated 16.9 years ago Mathe, Ewy NIH/NCI [F] ▴ 40
0
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0
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734
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BMP4 probe '1940386' missing in illuminaHumanv2BeadID.db (as compared to illuminaHumanv2ProbeID.db)
Annotation Cancer probe annotate Annotation Cancer probe annotate
17.0 years ago Julian Lee ▴ 140
0
votes
18
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3.5k
views
LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer gcrma LPE affylmGUI Cancer gcrma LPE affylmGUI
updated 17.0 years ago by ▴ 70 • written 17.0 years ago by ★ 13k
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0
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1.3k
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Beadarray and illumina methylation arrays
Normalization Cancer beadarray Normalization Cancer beadarray
17.0 years ago Julian Lee ▴ 140
0
votes
5
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1.6k
views
BMP4 probe '1940386' missing in illuminaHumanv2BeadID.db (as compared to illuminaHumanv2ProbeID.db)
Cancer annotate Cancer annotate
updated 17.0 years ago by ★ 7.2k • written 17.0 years ago by ▴ 140
0
votes
2
replies
1.3k
views
LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer gcrma LPE Cancer gcrma LPE
updated 17.0 years ago by ★ 1.6k • written 17.0 years ago by ▴ 70
0
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1
reply
1.2k
views
Reading ArrayExpress data [was Re: questions on the ImaGene data using limma package]
Annotation Normalization GO Cancer limma ArrayExpress Annotation Normalization GO Cancer
updated 17.0 years ago by ▴ 280 • written 17.0 years ago by 53k
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1
reply
1.1k
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questions on the ImaGene data using limma package
Normalization Cancer limma Normalization Cancer limma
17.0 years ago Ming YI [Contr] ▴ 30
0
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4
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1.4k
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Reading ArrayExpress data [was Re: questions on the ImaGene data using limma package]
Annotation Normalization Cancer limma ArrayExpress Annotation Normalization Cancer limma
updated 17.0 years ago by ▴ 30 • written 17.0 years ago by 53k
0
votes
2
replies
1.8k
views
Error when trying to build a package that needs to import GO.db, GOstats, ath1121501.db packages
Annotation GO Cancer ath1121501 AnnotationDbi BHC Annotation GO Cancer ath1121501 BHC
updated 17.0 years ago by ▴ 60 • written 17.0 years ago by 25k
0
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4
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1.2k
views
sequencing workshop
Cancer Cancer
updated 17.0 years ago by ★ 1.6k • written 17.0 years ago by ★ 5.5k
0
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0
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1.5k
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[Fwd: batch info for cellHTS]
GO Cancer cellHTS cellHTS2 GO Cancer cellHTS cellHTS2
17.0 years ago Florian Hahne ▴ 540
0
votes
8
replies
1.4k
views
Limma contrasts question
Cancer Cancer
updated 17.0 years ago by 68k • written 17.0 years ago by ★ 1.9k
0
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0
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1.2k
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The EMMES Corporation-Statistical Analyst position
Microarray Cancer Microarray Cancer
17.0 years ago Marcella Pickard ▴ 10
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0
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1.2k
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The us of bioConductor to analyze raw and segmented data from TCGA (The Cancer Genome Atlas)
SNP Cancer SNP Cancer
17.0 years ago Wang, Frank IM, Americas ▴ 10
0
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0
replies
1.9k
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Postdoc positions at the Cancer Research UK Cambridge Research Institute
SNP Genetics Pathways Cancer CGH microRNA SNP Genetics Pathways Cancer CGH microRNA
17.0 years ago Florian Markowetz ▴ 20
0
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2
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1.5k
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CGHcall error
aCGH Normalization Cancer aCGH CGHcall copynumber aCGH Normalization Cancer aCGH CGHcall
updated 17.0 years ago by ▴ 110 • written 17.0 years ago by ▴ 40
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0
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1.3k
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problem installing affycoretools in R in linux environment
GO Cancer biomaRt affycoretools GO Cancer biomaRt affycoretools
17.0 years ago rgentleman ★ 5.5k
0
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1
reply
1.1k
views
How to load annotations for pkgENTREZID, pkgGENENAME dynamically?
Cancer hgu95av2 affy Cancer hgu95av2 affy
updated 17.1 years ago by ▴ 360 • written 17.1 years ago by 25k
0
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0
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1.1k
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spiked controls wrong order on samples wit 2 rounds of amplification normalize with GCRMA
Microarray Cancer affy gcrma affyPLM Microarray Cancer affy gcrma affyPLM
17.1 years ago Richard Friedman ★ 2.0k
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4
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1.7k
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How do you keep track of your analyses
Cancer Cancer
updated 17.1 years ago by ▴ 60 • written 17.1 years ago by ★ 1.9k
0
votes
1
reply
846
views
Bioconductor and sequencing
Sequencing Cancer Sequencing Cancer
updated 17.1 years ago by ▴ 150 • written 17.1 years ago by ★ 5.5k
0
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0
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1.1k
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Ensembl IDs 2 GO term enrichment --> simple solution without biomart? ( I can't install it because of RCurl)
Annotation GO Cancer GOstats biomaRt Annotation GO Cancer GOstats biomaRt
17.1 years ago Emmanuel Levy ▴ 270
0
votes
2
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1.4k
views
biomart doesn't annotate all the genes queried -CEACAM6
Cancer hgu133plus2 annotate affy biomaRt Cancer hgu133plus2 annotate affy biomaRt
17.1 years ago Julian Lee ▴ 140
1
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0
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1.1k
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SIM new package for Statistical Integration of Microarrays
SNP Microarray Visualization Cancer SNP Microarray Visualization Cancer
17.1 years ago Maarten van Iterson ▴ 60
0
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1
reply
1.1k
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kinexus antibody arrays
Cancer Cancer
17.1 years ago Richard Friedman ★ 2.0k
0
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0
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919
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Pd info package affy 10K array
Microarray Annotation Cancer cdf probe affy Microarray Annotation Cancer cdf probe affy
17.1 years ago Henrik Bengtsson ★ 2.4k
0
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1
reply
1.7k
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arrayQualityMetrics - how do I use this with an MAList object???
Cancer convert arrayQualityMetrics Cancer convert arrayQualityMetrics
updated 17.1 years ago by ▴ 680 • written 17.1 years ago by 25k
0
votes
1
reply
1.3k
views
Agilent Human Genome CGH 44K annotation
Annotation Cancer CGH Annotation Cancer CGH
updated 17.1 years ago by 21k • written 17.1 years ago by ★ 1.9k
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0
replies
998
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Using limma for omnibus F tests
Cancer limma Cancer limma
17.1 years ago Gordon Smyth 53k
0
votes
2
replies
1.6k
views
LOH analysis for illumina data
SNP Cancer Prostate SNP Cancer Prostate
17.1 years ago Yu Chuan Tai ▴ 440
0
votes
1
reply
924
views
RMAGEML installation and ArrayExpress database
Cancer RMAGEML ArrayExpress Cancer RMAGEML ArrayExpress
17.1 years ago Martin Morgan 25k
0
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1
reply
1.2k
views
ANNOUNCEMENT: 20% Discount on Books from Chapman & Hall/CRC!
Proteomics Cancer Proteomics Cancer
17.2 years ago Thomas, Judy ▴ 40
0
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1
reply
1.5k
views
library(affyQCReport)-NA(arg1); arrayQualityMetrics-no end
Cancer cdf affy simpleaffy affyQCReport affyio arrayQualityMetrics Cancer cdf affy
updated 17.2 years ago by ★ 5.5k • written 17.2 years ago by ▴ 200
0
votes
4
replies
1.7k
views
Quality control;Missing value;installation
Cancer cdf affy affyQCReport affyio arrayQualityMetrics Cancer cdf affy affyQCReport
updated 17.2 years ago by ★ 5.5k • written 17.2 years ago by ▴ 200
0
votes
2
replies
1.6k
views
Adding a text label to the classvec colour bar in heatplot
Clustering Cancer graph GLAD Clustering Cancer graph GLAD
updated 17.2 years ago by ▴ 460 • written 17.2 years ago by ★ 6.5k
0
votes
0
replies
1.2k
views
Is anyone developing an extensible Galaxy-like interface for Bioconductor?
Cancer affylmGUI limmaGUI Cancer affylmGUI limmaGUI
17.2 years ago Martin Morgan 25k
0
votes
4
replies
1.9k
views
Adding a text label to the classvec colour bar in heatplot
Clustering Cancer graph Clustering Cancer graph
updated 17.2 years ago by ▴ 460 • written 17.2 years ago by ▴ 510
0
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0
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1.4k
views
confusion about nomenclature of illumina annotationpackages
BiocViews Annotation Cancer Mus musculus illuminaHumanv1 illuminaHumanv2 probe annotate
17.2 years ago Lynn Amon ▴ 280
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0
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1.5k
views
Create affyBatch from mouse exon array data using ReadAffy or extractAffyBatch() from aroma.affymetrix
Epigenetics Cancer probe affy xps Epigenetics Cancer probe affy xps
17.3 years ago Martin Morgan 25k
0
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3
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1.2k
views
Small RNAs database
Cancer Cancer
updated 17.3 years ago by ★ 13k • written 17.3 years ago by ★ 1.9k
1,555 results • Page 19 of 32
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Comment: gene Set with high AUC score but no cells assigned to cell type by eja.hdrer33ge.r.m • 0
Understanding complex data results like those from AUCell can be challenging. For easier analysis and better data management on the go you …
Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0
Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…
Comment: DESeq2 design for haplotype MPRA by Rita • 0
Thank you very much, I appreciate it!
Answer: DESeq2 design for haplotype MPRA by Michael Love 43k
> My goal is to identify which non-reference haplotypes are differentially active compared to the corresponding ref/ref haplotype within ea…
Answer: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by James W. MacDonald 68k
It seems fine on devel as well. ``` > BSgenome.Hsapiens.UCSC.hg38 | BSgenome object for Human | - organism: Homo sapiens | - provide…
Votes
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
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