Showing : Cancer • reset
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A question about criteria for calling gain and loss in aCGH data
aCGH Cancer aCGH aCGH Cancer aCGH
17.3 years ago affy snp ▴ 640
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3
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1.1k
views
SPECIAL 20% OFF DISCOUNT ON A NEW BOOK FROM CRC PRESS
Cancer Cancer
written 17.3 years ago by ▴ 40
0
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4
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1.5k
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LARGE Change in GCRMA expression values between versions (REPEAT QUESTION: PLEASE REPLY)
Cancer gcrma Cancer gcrma
updated 17.3 years ago by ▴ 260 • written 17.3 years ago by ★ 2.0k
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9
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2.4k
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gains and losses via mode shifting
Cancer CGH Cancer CGH
17.3 years ago Oscar Rueda ▴ 60
0
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0
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917
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Pd info package affy 10K array
Microarray Annotation Network Cancer cdf probe affy Microarray Annotation Network Cancer
17.3 years ago Henrik Bengtsson ★ 2.4k
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1
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1.2k
views
kOverA(k, A=100, na.rm=TRUE)
GO Preprocessing Cancer genefilter limma GO Preprocessing Cancer genefilter limma
updated 17.3 years ago by ★ 5.5k • written 17.3 years ago by ▴ 30
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1.1k
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cross study comparison of cell populations
Cancer affy metaArray Cancer affy metaArray
17.3 years ago Max Kauer ▴ 140
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0
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719
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GCRMA-induced correlations? LARGE Change in GCRMA expression values (REPEAT QUESTION)
Microarray Normalization Cancer gcrma Microarray Normalization Cancer gcrma
17.3 years ago Richard Friedman ★ 2.0k
0
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1
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881
views
R 2.7.1
Cancer Cancer
updated 17.3 years ago by 21k • written 17.3 years ago by ★ 1.9k
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2
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1.4k
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CGH-like workflow for Affymetrix SNP 500k
aCGH SNP Cancer DNAcopy aCGH aCGH SNP Cancer DNAcopy aCGH
updated 17.3 years ago by ★ 2.4k • written 17.3 years ago by ★ 1.9k
0
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1
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627
views
Fwd: Re: html "help"
Microarray Cancer Microarray Cancer
updated 17.3 years ago by 68k • written 17.3 years ago by ★ 6.0k
1
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0
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1.9k
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Agilent - importing and reading problems
Microarray Cancer limma Microarray Cancer limma
17.3 years ago Bernal-Mizrachi, Leon ▴ 50
0
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3
replies
1.1k
views
Find Affy probes within a particular region
Annotation GO Cancer biomaRt Annotation GO Cancer biomaRt
updated 17.3 years ago by 68k • written 17.3 years ago by ★ 1.9k
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0
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1.0k
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GSEA GeneSetCollection for GO info from Illumina annotation package
Annotation GO Cancer Annotation GO Cancer
17.4 years ago Martin Morgan 25k
0
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2
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1.4k
views
Do my Limma results look "normal"?
Microarray Cancer Breast limma GeneSpring Microarray Cancer Breast limma GeneSpring
updated 17.4 years ago by ★ 1.3k • written 17.4 years ago by 53k
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0
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902
views
Possible Bug in readExpressionSet
Cancer Biobase Cancer Biobase
17.4 years ago Martin Morgan 25k
0
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0
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1.1k
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Jobs
Cancer Cancer
17.4 years ago Crispin Miller ★ 1.1k
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2
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1.5k
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Do my Limma results look "normal"?
Microarray Cancer Breast limma GeneSpring Microarray Cancer Breast limma GeneSpring
updated 17.4 years ago by ★ 5.5k • written 17.4 years ago by ★ 1.3k
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0
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748
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Problem viewing vignettes : openPDF and pdfviewer and possible fix
Cancer Biobase Cancer Biobase
17.4 years ago Martin Morgan 25k
0
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0
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1.2k
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missing probes from illuminaHumanv3ProbeID.db
Annotation Cancer bgx Annotation Cancer bgx
17.4 years ago Lynn Amon ▴ 280
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0
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1.2k
views
Rank Products- breast cancer
Cancer RankProd Cancer RankProd
17.4 years ago Eleni Christodoulou ▴ 150
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0
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1.8k
views
open Junior group leader position, Medical University of Innsbruck, Austria
Proteomics Cancer microRNA tRanslatome Proteomics Cancer microRNA tRanslatome
17.4 years ago Johannes Rainer ▴ 300
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0
replies
832
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Employment opportunities
Network Cancer Network Cancer
17.4 years ago Martin Morgan 25k
0
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0
replies
618
views
BioC 2008 updates
Cancer Cancer
17.4 years ago rgentleman ★ 5.5k
0
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3
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1.8k
views
Specific annotation information from ExpressionSet
Annotation Cancer probe Annotation Cancer probe
updated 17.4 years ago by 25k • written 17.4 years ago by ★ 1.9k
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0
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1.6k
views
Bioinformatics Faculty Position available at UCSF Cancer Center
Proteomics Cancer Proteomics Cancer
17.4 years ago Ru-Fang Yeh ▴ 20
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0
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1.5k
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Variance correction, coxph or cph model
Cancer Cancer
17.4 years ago Aedin Culhane ▴ 510
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5
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3.6k
views
Finding genes with significant linear regression or trend
Microarray Regression Cancer limma DOSE Microarray Regression Cancer limma DOSE
updated 17.4 years ago by ▴ 340 • written 17.4 years ago by ★ 1.9k
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0
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1.2k
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Rtreemix (NEW package)
Cancer HIV Rtreemix Cancer HIV Rtreemix
17.4 years ago Jasmina Bogojeska ▴ 30
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2
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1.7k
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GSEABase how to map gene symbols to mouse EntrezId or Affy
Cancer affy Cancer affy
17.4 years ago Martin Morgan 25k
0
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1
reply
789
views
GCRMA-induced correlations? LARGE Change in GCRMA expression values
Microarray Normalization Cancer gcrma Microarray Normalization Cancer gcrma
updated 17.4 years ago by ★ 4.1k • written 17.4 years ago by ★ 2.0k
0
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0
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587
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Bioinformatics Engineer for Deep Sequencing
Cancer Cancer
17.4 years ago N S ▴ 10
0
votes
1
reply
935
views
Limma: Design matrix question
Microarray Cancer Microarray Cancer
updated 17.4 years ago by ▴ 100 • written 17.4 years ago by ★ 1.9k
0
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0
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1.0k
views
snapCGH and Nimblegen arrays
Cancer snapCGH Cancer snapCGH
17.4 years ago Gareth Wilson ▴ 10
0
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3
replies
1.2k
views
aCGH package - performance Issues
SNP Cancer SNP Cancer
17.5 years ago Julian Lee ▴ 140
0
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3
replies
2.1k
views
ExpressionSet or MAList
Annotation ExperimentData Cancer Annotation ExperimentData Cancer
updated 17.5 years ago by 53k • written 17.5 years ago by ★ 1.9k
0
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1
reply
784
views
ExpressionSet or MAList
Microarray Annotation Cancer Microarray Annotation Cancer
updated 17.5 years ago by ★ 13k • written 17.5 years ago by 53k
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0
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2.1k
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Bioinformatics Positions, National Cancer Centre Singapore
Microarray Epigenetics Cancer Microarray Epigenetics Cancer
17.5 years ago Julian Lee ▴ 140
0
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3
replies
1.1k
views
MIAME object and abstract
Cancer Cancer
updated 17.5 years ago by 25k • written 17.5 years ago by ★ 1.9k
0
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1
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1.0k
views
Detection above background (dabg) within bioconductor
Cancer Cancer
updated 17.5 years ago by ★ 3.9k • written 17.5 years ago by ★ 1.9k
0
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1
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1.6k
views
BioC 2.2 now available
SNP Microarray Genetics Annotation Preprocessing Bayesian Clustering Infrastructure Cancer
updated 17.5 years ago by ★ 1.6k • written 17.5 years ago by 25k
0
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0
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668
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Cutoff for non-specific gene filtering?
Cancer Cancer
17.5 years ago Suraj Menon ▴ 50
0
votes
1
reply
1.0k
views
Separate function edit window in Linux
Cancer Cancer
updated 17.5 years ago by ★ 1.1k • written 17.5 years ago by ★ 1.9k
0
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1
reply
839
views
ExpressionSet or MAList
Microarray Annotation Cancer Microarray Annotation Cancer
updated 17.5 years ago by 25k • written 17.5 years ago by ★ 1.9k
0
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1
reply
1.6k
views
Bug report: Help pages for degree (package graph) not displayed
Cancer graph SNAData Cancer graph SNAData
updated 17.5 years ago by ★ 1.6k • written 17.5 years ago by 25k
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0
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1.6k
views
Bioinformatics Positions, M. D. Anderson Cancer Center
Proteomics Cancer Proteomics Cancer
17.5 years ago caiwei@mdanderson.org ▴ 110
0
votes
4
replies
1.4k
views
mouse4302.db vs mouse 4302
Annotation Cancer mouse4302 Annotation Cancer mouse4302
updated 17.5 years ago by ★ 7.2k • written 17.5 years ago by ★ 2.0k
0
votes
1
reply
774
views
Limma: import files with genes missing
Annotation Cancer probe limma ASSIGN Annotation Cancer probe limma ASSIGN
17.5 years ago Gordon Smyth 53k
0
votes
0
replies
791
views
Limma: import files with genes missing
Cancer probe limma Cancer probe limma
17.5 years ago Daniel Brewer ★ 1.9k
0
votes
3
replies
1.3k
views
mouse4302,db_2.0.2 in AffylmGUI
Annotation Cancer mouse4302 affy limma Annotation Cancer mouse4302 affy limma
updated 17.5 years ago by ▴ 450 • written 17.5 years ago by ★ 2.0k
1,555 results • Page 20 of 32
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Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0
Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …
Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0
Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…
Comment: DESeq2 design for haplotype MPRA by Rita • 0
Thank you very much, I appreciate it!
Answer: DESeq2 design for haplotype MPRA by Michael Love 43k
> My goal is to identify which non-reference haplotypes are differentially active compared to the corresponding ref/ref haplotype within ea…
Answer: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by James W. MacDonald 68k
It seems fine on devel as well. ``` > BSgenome.Hsapiens.UCSC.hg38 | BSgenome object for Human | - organism: Homo sapiens | - provide…
Votes
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
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