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ChipDb
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0
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AnnotationDbi Error: PROSITE is defunct.
ChipDb
AnnotationDbi
Annotation
16 months ago • updated 15 months ago
ahiser
• 0
0
votes
3
replies
830
views
How to handle multiple assay versions in a ChipDb annotation package
ChipDb
AnnotationDbi
AnnotationForge
updated 18 months ago by
James W. MacDonald
66k • written 18 months ago by
ahiser
• 0
2
votes
2
replies
2.5k
views
ChIP seeker annotation error
DiffBind
chipseq
ChIPseeker
ChipDb
annotation
3.7 years ago • updated 3.5 years ago
Mar Mar
▴ 20
0
votes
4
replies
1.8k
views
hugene10sttranscriptclusterACCNUM has no mappings
Annotation
GO
ChipDb
probe
updated 9.9 years ago by
Thomas Pfau
▴ 20 • written 9.9 years ago by
Marc Carlson
★ 7.2k
4 results • Page
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Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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