Bioconductor Chromosome

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2.5k

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Gviz chromosome ideogram

updated 7.2 years ago by bernatgel ▴ 150 • written 7.2 years ago by dulunar ▴ 10

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9.7k

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SNP rs id Biomart Chromosome coordinates

updated 9 months ago by James W. MacDonald 65k • written 3.7 years ago by Mahan • 0

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789

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homo sapiens chromosome

updated 5.9 years ago by James W. MacDonald 65k • written 5.9 years ago by xchen8 • 0

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493

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edgeR chromosome RNAseq

updated 4.1 years ago by swbarnes2 ★ 1.3k • written 4.1 years ago by missmoparker • 0

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783

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tximport GCF feature table parsing error chromosome

updated 4.1 years ago by Michael Love 41k • written 4.1 years ago by knholm • 0

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780

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Chromosome Annotation

updated 3.8 years ago by James W. MacDonald 65k • written 3.8 years ago by Bine ▴ 40

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1.8k

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GenomicRanges split chromosome TxDb

updated 2.4 years ago by Hervé Pagès 16k • written 2.4 years ago by jon.klonowski ▴ 40

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558

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gene chromosome proteincodinggene

12 months ago Liliian • 0

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1.9k

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bsgenome chromosome reference genome

updated 6.2 years ago by Hervé Pagès 16k • written 6.2 years ago by Nathan Sheffield ▴ 10

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515

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RefSeq Chromosome Mutalyzer

4.1 years ago heiko_kin ▴ 60

10 results • Page 1 of 1

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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

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Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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