Bioconductor ClusterProfiler

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104

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KEGGgraph org.Cs.eg.db clusterProfiler KEGG AnnotationHubSoftware

updated 9 days ago by James W. MacDonald 65k • written 9 days ago by fernanda.backsouza ▴ 10

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370

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clusterProfiler GenomicDistributionsData KEGG

11 days ago • updated 8 days ago fernanda.backsouza ▴ 10

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180

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clusterProfiler OrgDb biomaRt Zea_mays

updated 13 days ago by James W. MacDonald 65k • written 14 days ago by sansan • 0

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131

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clusterProfiler GeneSetEnrichment

16 days ago Ana • 0

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188

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Pathways clusterProfiler gseKEGG KEGG

20 days ago julia_mcdonough • 0

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157

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DOSE enrichplot clusterProfiler

updated 18 days ago by Guido Hooiveld ★ 3.9k • written 22 days ago by Lucie • 0

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177

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clusterProfiler ggpubr

updated 24 days ago by James W. MacDonald 65k • written 25 days ago by BCS12 • 0

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142

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clusterProfiler gseKEGG

27 days ago andromeda • 0

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850

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clusterProfiler RNASeq

updated 8 days ago by Guangchuang Yu ★ 1.2k • written 14 months ago by ruiqi.li ▴ 10

9 results • Page 1 of 1

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Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k

Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

In that case both time and treatment are identical things, so choose one and go with it.

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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