Bioconductor ClusterProfiler

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KEGGgraph org.Cs.eg.db clusterProfiler KEGG AnnotationHubSoftware

updated 4 days ago by James W. MacDonald 65k • written 4 days ago by fernanda.backsouza ▴ 10

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302

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clusterProfiler GenomicDistributionsData KEGG

5 days ago • updated 2 days ago fernanda.backsouza ▴ 10

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145

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clusterProfiler OrgDb biomaRt Zea_mays

updated 8 days ago by James W. MacDonald 65k • written 8 days ago by sansan • 0

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115

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clusterProfiler GeneSetEnrichment

11 days ago Ana • 0

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174

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Pathways clusterProfiler gseKEGG KEGG

15 days ago • updated 14 days ago julia_mcdonough • 0

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138

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DOSE enrichplot clusterProfiler

updated 13 days ago by Guido Hooiveld ★ 3.9k • written 16 days ago by Lucie • 0

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166

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clusterProfiler ggpubr

updated 19 days ago by James W. MacDonald 65k • written 19 days ago by BCS12 • 0

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134

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clusterProfiler gseKEGG

22 days ago • updated 21 days ago andromeda • 0

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821

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clusterProfiler RNASeq

updated 3 days ago by Guangchuang Yu ★ 1.2k • written 14 months ago by ruiqi.li ▴ 10

9 results • Page 1 of 1

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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

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Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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