Bioconductor ClusterProfiler

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823

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clusterProfiler RNASeq

updated 4 days ago by Guangchuang Yu ★ 1.2k • written 14 months ago by ruiqi.li ▴ 10

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320

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clusterProfiler GenomicDistributionsData KEGG

6 days ago • updated 3 days ago fernanda.backsouza ▴ 10

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176

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Pathways clusterProfiler gseKEGG KEGG

16 days ago • updated 15 days ago julia_mcdonough • 0

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167

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clusterProfiler ggpubr

updated 20 days ago by James W. MacDonald 65k • written 20 days ago by BCS12 • 0

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153

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clusterProfiler OrgDb biomaRt Zea_mays

updated 9 days ago by James W. MacDonald 65k • written 9 days ago by sansan • 0

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139

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DOSE enrichplot clusterProfiler

updated 14 days ago by Guido Hooiveld ★ 3.9k • written 17 days ago by Lucie • 0

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134

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clusterProfiler gseKEGG

23 days ago • updated 22 days ago andromeda • 0

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117

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clusterProfiler GeneSetEnrichment

12 days ago Ana • 0

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KEGGgraph org.Cs.eg.db clusterProfiler KEGG AnnotationHubSoftware

updated 4 days ago by James W. MacDonald 65k • written 4 days ago by fernanda.backsouza ▴ 10

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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…

Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

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Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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