Showing : Clustering • reset
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how to do the time series analysis?
Clustering Clustering
updated 12.2 years ago by ▴ 10 • written 12.2 years ago by ★ 2.0k
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Diffbind: Binding Affinity Heatmap
Sequencing GO Clustering GLAD edgeR DESeq DiffBind Sequencing GO Clustering GLAD edgeR
12.3 years ago • updated 12.2 years ago Rory Stark ★ 5.2k
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use Combat to adjust for hidden variables without knowing batch effect
Clustering sva Clustering sva
12.3 years ago W. Evan Johnson ▴ 870
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5
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Illumina Probe_ID used in the LIMMA package for neqc function
Microarray Annotation Normalization Clustering probe limma Microarray Annotation probe
updated 12.4 years ago by ▴ 40 • written 12.4 years ago by ★ 3.6k
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Can we apply WGCNA to RNA-seq dataset?
RNASeq Clustering RNASeq Clustering
12.4 years ago faranak ▴ 10
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932
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Gene expression clustering using several dependent samples
Clustering affy Clustering affy
12.4 years ago Moritz Kebschull ▴ 100
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Unable to \'standardise\' logtransformed dataset of contrasts using Mfuzz package
Clustering limma Clustering limma
updated 12.4 years ago by ▴ 20 • written 12.4 years ago by ★ 13k
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ComBat function (sva) generates very low adjusted p.values for a big number of genes
Microarray Normalization Clustering limma sva Microarray Normalization Clustering limma
12.4 years ago Alexandra Popa ▴ 10
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1
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1.3k
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Bioconductor Digest, Vol 124, Issue 5
GO Clustering edgeR GO Clustering edgeR
updated 12.4 years ago by ▴ 40 • written 12.4 years ago by ▴ 870
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1
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2.3k
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DESeq Variance Stabilizing Transformation (now with non-embedded images)
Normalization Clustering DESeq DESeq2 Normalization Clustering DESeq DESeq2
updated 12.5 years ago by 43k • written 12.5 years ago by ▴ 50
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1.7k
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How to analyze Agilent DNA Methylation Microarray Analysis
Clustering Cancer Clustering Cancer
12.5 years ago Guest User ★ 13k
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6.0k
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DESeq Variance Stabilizing Transformation
Clustering DESeq DESeq2 Clustering DESeq DESeq2
updated 12.5 years ago by 43k • written 12.5 years ago by ▴ 50
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ComBat � - multi-modal prior distribution
Clustering Clustering
12.5 years ago Guest User ★ 13k
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ConsensusClusterPlus updated
Clustering ConsensusClusterPlus Clustering ConsensusClusterPlus
12.6 years ago Matthew D. Wilkerson ▴ 20
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5
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brief quesion on DESeq2
Clustering GenomicRanges DESeq2 Clustering GenomicRanges DESeq2
updated 12.6 years ago by ▴ 20 • written 12.6 years ago by 43k
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Bioconductor Digest, Vol 121, Issue 29
miRNA Annotation Normalization Visualization Clustering Infrastructure Cancer BSgenome vsn
12.6 years ago Matthew Thornton ▴ 380
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1.1k
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two color arrays, LIMMA and GOstats analysis
Clustering graph Clustering graph
12.6 years ago Andreas Heider ▴ 340
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CAMDA 2013 Challenge: Big Data in Life Sciences
Sequencing Microarray Genetics Classification Clustering Regression Sequencing Microarray
12.6 years ago CAMDA 2013 ▴ 30
0
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5
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DESeq2
Normalization Classification Clustering DESeq cqn DESeq2 Normalization Classification cqn
updated 12.7 years ago by 43k • written 12.7 years ago by ★ 13k
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MCS & ChemineR
Network Clustering PROcess ChemmineR Network Clustering PROcess ChemmineR
12.7 years ago Thomas Girke ★ 1.7k
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2.5k
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Bioconductor Digest, Vol 121, Issue 13
RNASeq Microarray Normalization GO Classification Clustering Cancer Mus musculus probe GO
12.7 years ago Matthew Thornton ▴ 380
0
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1
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1.4k
views
R and High performance computing - Functions for Bioconductor users with large datasets
Clustering Clustering
updated 12.7 years ago by ★ 1.0k • written 12.8 years ago by ▴ 20
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0
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We've posted our 2013***R Courses*** by XLSolutions Corp at 9 USA Cities: San Francisco, New York, Washington DC, Houston, Boston, Las Vegas, Seattle…
Clustering Clustering
12.8 years ago sue@xlsolutions-corp.com ▴ 570
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0
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1.8k
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2013***R Courses*** by XLSolutions Corp at 9 USA Cities: San Francisco, New York, Washington DC, Houston, Boston, Las Vegas, Seattle, etc
Clustering Clustering
12.9 years ago sue@xlsolutions-corp.com ▴ 570
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cell-cycle models
Clustering flowStats Clustering flowStats
12.9 years ago Guest User ★ 13k
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0
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1.6k
views
ChemmineR Help
Clustering ChemmineR Clustering ChemmineR
13.0 years ago Thomas Girke ★ 1.7k
0
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0
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1.6k
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ComBat: running with all samples but fail with sub-selection
Clustering Clustering
13.0 years ago W. Evan Johnson ▴ 870
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0
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1.8k
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FW: Using HTqPCR for Fluidigm BioMark input data (48.48 array)
Clustering HTqPCR Clustering HTqPCR
13.0 years ago Fletez-Brant, Christopher NIH/VRC [C] ▴ 60
0
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1
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1.9k
views
Using HTqPCR for Fluidigm BioMark input data (48.48 array)
Clustering HTqPCR Clustering HTqPCR
updated 13.0 years ago by ▴ 60 • written 13.0 years ago by ▴ 10
0
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1
reply
726
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clustering to find out similarity in promoters
Clustering Clustering
updated 13.0 years ago by 21k • written 13.0 years ago by ★ 13k
0
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1
reply
1.5k
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How to get Gene ontology (GO) terms per probe
GO Clustering rat2302 annotate GO Clustering rat2302 annotate
updated 13.1 years ago by 68k • written 13.1 years ago by ★ 13k
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1
reply
1.6k
views
clustering in R
Clustering Clustering
updated 13.1 years ago by 68k • written 13.1 years ago by ★ 13k
14
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4
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30k
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heatmap.2() get matrix after hierarchical clustering
Clustering Clustering
updated 13.1 years ago by ★ 1.7k • written 13.1 years ago by ★ 13k
0
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1.0k
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(no subject)
Clustering probe limma GLAD Clustering probe limma GLAD
13.3 years ago Gordon Smyth 53k
0
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1
reply
666
views
PhD student need advice
Clustering Clustering
updated 13.3 years ago by ★ 13k • written 13.3 years ago by ▴ 10
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3
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2.1k
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GO enrichment significance
GO Clustering Cancer Lung GO Clustering Cancer Lung
13.4 years ago • updated 13.3 years ago Grimes Mark ▴ 40
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1.1k
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Clustering question
Clustering Clustering
updated 13.3 years ago by ★ 4.2k • written 13.3 years ago by ▴ 440
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0
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1.5k
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Scaling color range of heatmap.2 with scaled row option
Microarray Genetics Clustering Microarray Genetics Clustering
13.4 years ago Yoo, Seungyeul ▴ 110
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3
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2.6k
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batch effects 450K
Clustering Cancer Breast minfi sva Clustering Cancer Breast minfi sva
updated 13.4 years ago by ▴ 110 • written 13.4 years ago by ★ 13k
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0
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2.3k
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pvclust error
Clustering Clustering
13.4 years ago Alyaa Mahmoud ▴ 440
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0
replies
974
views
Help with adSplit package
Microarray GO Clustering adSplit Microarray GO Clustering adSplit
13.5 years ago Luz Mayela Soto ▴ 10
0
votes
1
reply
15k
views
error under "hclust" for expression data
Clustering Clustering
updated 13.5 years ago by ▴ 610 • written 13.5 years ago by ▴ 180
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0
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913
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May-July 2012 ***R/S-PLUS Courses***by XLSolutions Corp at 9 USA locations
Clustering Clustering
13.5 years ago sue@xlsolutions-corp.com ▴ 570
0
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0
replies
619
views
Array weights in the 'removeBatchEffect' function?
Clustering limma Clustering limma
13.6 years ago Gordon Smyth 53k
0
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1
reply
1.9k
views
GOseq for enrichment of clustering results
GO Clustering goseq GO Clustering goseq
updated 13.6 years ago by ▴ 100 • written 13.6 years ago by ▴ 110
0
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1
reply
1.4k
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clustering RNA-Seq data and performing gene set enrichment analysis
Normalization Clustering Normalization Clustering
13.6 years ago Julie Leonard ▴ 110
0
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1
reply
1.4k
views
flowClust problem
Clustering flowClust Clustering flowClust
updated 13.6 years ago by ★ 6.8k • written 13.6 years ago by ▴ 30
0
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0
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1.1k
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flowClust error
Clustering flowClust Clustering flowClust
13.6 years ago Anja Mirenska ▴ 30
0
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0
replies
797
views
February-March 2012 ***R/S-PLUS Courses***by XLSolutions Corp at 9 USA locations
Clustering Clustering
13.8 years ago sue@xlsolutions-corp.com ▴ 570
0
votes
1
reply
1.7k
views
SOM clustering
Microarray Clustering Microarray Clustering
updated 13.8 years ago by ▴ 300 • written 13.8 years ago by ★ 13k
374 results • Page 3 of 8
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Comment: After running samtools, the featureCounts command crashed. by surprised.swordtail.tlfy • 0
Hey Rui, that's a tricky error! Kevin's suggestion about the GTF file makes total sense. I've had similar issues with file paths in WSL cau…
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
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Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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