Showing : Clustering • reset
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displaying clustering results in TreeView or MapleTree
Microarray Clustering Kidney Ovarian probe hopach Microarray Clustering Kidney Ovarian
13.9 years ago Mark Baumeister ▴ 40
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HTqPCR useful for ChIP data ?
Preprocessing Clustering HTqPCR Preprocessing Clustering HTqPCR
updated 3.0 years ago by • 0 • written 13.9 years ago by ▴ 10
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Summarising Probe Sets for Agilent 4x44 Arrays
Clustering probe PROcess Clustering probe PROcess
updated 13.9 years ago by ▴ 80 • written 13.9 years ago by ▴ 10
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DEseq for sample clustering
Visualization Clustering DESeq Visualization Clustering DESeq
updated 14.0 years ago by ★ 13k • written 14.0 years ago by ★ 13k
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heatmap.2 function and the scale option
Microarray Clustering Microarray Clustering
updated 14.1 years ago by ▴ 80 • written 14.1 years ago by ▴ 560
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1.2k
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right normalization?
Clustering Clustering
updated 14.1 years ago by ★ 13k • written 14.1 years ago by ▴ 240
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Clustering of 30,000+ genes
Microarray Clustering genefilter GSCA Microarray Clustering genefilter GSCA
14.2 years ago Thorsten Forster ▴ 10
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Can we apply WGCNA to RNA-seq dataset?
Network Clustering Network Clustering
14.3 years ago Biase, Fernando ▴ 150
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clustering of expression data
Clustering Clustering
14.5 years ago sanchita 0804 ▴ 50
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768
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error coming when testing total no of possible clusters in k-means
Clustering Clustering
14.5 years ago Budhayash Gautam ▴ 90
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karyotype annotation
Clustering annotate quantsmooth Clustering annotate quantsmooth
updated 14.6 years ago by ▴ 550 • written 14.6 years ago by ▴ 30
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1.3k
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karyotype annotation
Clustering annotate Clustering annotate
updated 14.6 years ago by ▴ 550 • written 14.6 years ago by ▴ 30
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Adapted clusterStab package
Clustering clusterStab Clustering clusterStab
updated 14.6 years ago by 68k • written 14.6 years ago by ▴ 360
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[Course] CSAMA 2011: Computational Statistics for Genome Biology (Ninth Edition)
Sequencing Microarray Alignment Annotation Clustering Cancer Biostrings AnnotationDbi
14.6 years ago stefano iacus ▴ 430
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Retrieving a subset from normalized microarray data for differential test in R package, Limma
Clustering limma Clustering limma
updated 14.6 years ago by ▴ 80 • written 14.6 years ago by ▴ 10
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[Mfuzz] y-axis values
Clustering Mfuzz Clustering Mfuzz
14.6 years ago boczniak767 ▴ 740
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1.3k
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Access the probe ids associated with each cluster
Clustering probe Clustering probe
updated 14.6 years ago by ★ 13k • written 14.6 years ago by ▴ 360
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DESeq variance stabilisation and clustering
Genetics Clustering PROcess DESeq Genetics Clustering PROcess DESeq
updated 14.7 years ago by ▴ 30 • written 14.7 years ago by ▴ 20
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heatmap.2 and makeContrasts
Clustering Clustering
updated 14.7 years ago by ★ 13k • written 14.7 years ago by ▴ 40
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hierarchial clustering
Clustering Clustering
updated 14.9 years ago by ★ 1.7k • written 14.9 years ago by ▴ 20
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qPCR Event Calendar - winter 2010
SNP qPCR Genetics Normalization Clustering Regression Cancer Breast Xenopus laevis probe
15.0 years ago qPCR Platform - the reference in real-t… ▴ 170
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Fwd: how to plot corr between two tissues/dendrograms
Microarray GO Clustering Microarray GO Clustering
updated 15.0 years ago by ★ 1.1k • written 15.0 years ago by 21k
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library (sma)
Microarray Clustering Microarray Clustering
updated 15.0 years ago by 68k • written 15.0 years ago by ▴ 10
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2
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1.3k
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how to plot corr between two tissues/dendrograms
Microarray GO Clustering Microarray GO Clustering
updated 15.0 years ago by 21k • written 15.0 years ago by ▴ 10
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1
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1.5k
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clustering of microarray time-series data
Microarray Clustering limma maSigPro Microarray Clustering limma maSigPro
updated 15.1 years ago by ▴ 240 • written 15.1 years ago by ▴ 740
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BioNet - interpretation of node score (Eva Benito Garagorri)
SNP Microarray GO Network Clustering Cancer Organism mgug4122a probe limma convert SNP
15.1 years ago Daniela Beißer ▴ 20
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qPCR Event Calendar - autumn/winter 2010
qPCR Normalization Clustering probe microRNA qPCR Normalization Clustering probe microRNA
15.2 years ago qPCR Platform - the reference in real-t… ▴ 170
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1.5k
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R/Bioc workshops at UC Riverside
Clustering Clustering
updated 15.2 years ago by ▴ 460 • written 15.2 years ago by ★ 1.7k
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Querying clustering in heatmap.2
Clustering Clustering
updated 15.2 years ago by ★ 13k • written 15.2 years ago by ▴ 50
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1.6k
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Clustering RNA-seq profiles and DE analysis using edgeR
Normalization Clustering edgeR Normalization Clustering edgeR
updated 15.4 years ago by ▴ 60 • written 15.4 years ago by 53k
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Clustering RNA-seq profiles using edgeR
Normalization Clustering edgeR Normalization Clustering edgeR
updated 15.4 years ago by ▴ 60 • written 15.4 years ago by 53k
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1.8k
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TLDA data
Clustering Cancer PROcess cycle HTqPCR Clustering Cancer PROcess cycle HTqPCR
updated 15.4 years ago by ★ 2.0k • written 15.4 years ago by ▴ 40
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1000 R tutorials/Links
Sequencing Microarray Genetics Visualization Network Bayesian Classification Clustering
15.5 years ago David Lyon ▴ 340
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836
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Reg: Error in hopach
Clustering Clustering
15.5 years ago Rohit Farmer ▴ 170
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834
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mclustersim function
GO Clustering limma GO Clustering limma
15.5 years ago Guido Leoni ▴ 200
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982
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Reg: hopach clustering
Clustering Clustering
updated 15.5 years ago by ★ 13k • written 15.5 years ago by ▴ 170
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Collaborators
Microarray Clustering Cancer Ovarian Microarray Clustering Cancer Ovarian
15.5 years ago Alexandru Floares ▴ 10
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709
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kmeans clustering and gene names; was Re: Bioconductor Digest, Vol 87, Issue 10
Clustering probe Clustering probe
15.5 years ago Sean Davis 21k
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Bioconductor Digest, Vol 87, Issue 25
Clustering Clustering
15.5 years ago avinash gupta ▴ 130
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3.1k
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Bioconductor Digest, Vol 87, Issue 10
Clustering hopach Clustering hopach
updated 15.5 years ago by ▴ 160 • written 15.5 years ago by ▴ 130
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Bioconductor Digest, Vol 87, Issue 17
Clustering pcaMethods Clustering pcaMethods
15.5 years ago avinash gupta ▴ 130
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1.3k
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Plotting trees - hclust object vs dendrogram
Clustering Clustering
15.5 years ago Anthony Ferrari ▴ 110
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1
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1.1k
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Query regarding Clustering
Clustering ctc Clustering ctc
updated 15.5 years ago by ▴ 120 • written 15.5 years ago by 21k
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950
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(no subject)
Microarray Clustering Microarray Clustering
updated 15.6 years ago by ▴ 810 • written 15.6 years ago by ▴ 120
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1.1k
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custom Affymetrix
Clustering PROcess Clustering PROcess
updated 15.6 years ago by ★ 13k • written 15.6 years ago by ▴ 20
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2.3k
views
Adjusting contrast in a heatmap
Clustering Clustering
updated 15.6 years ago by ★ 13k • written 15.6 years ago by ▴ 110
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1
reply
1.9k
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Plotting trees - hclust object vs dendrogram
Clustering Clustering
updated 15.6 years ago by ★ 13k • written 15.6 years ago by ▴ 110
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3
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1.4k
views
Reg: Different clustering methods available for affy data
Clustering Clustering
updated 15.6 years ago by 21k • written 15.6 years ago by ▴ 170
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1.9k
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pvclust and distance matrices
Clustering Clustering
15.6 years ago Glazko, Galina ▴ 350
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1.1k
views
stuck with affy/ limma
Clustering genefilter affy limma Clustering genefilter affy limma
15.6 years ago Maxim ▴ 170
374 results • Page 4 of 8
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Replies
Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Awards • All
Popular Question to Hervé Pagès 16k
Popular Question to shepherl 4.2k
Scholar to James W. MacDonald 68k
Popular Question to Daniel Cameron ▴ 40
Popular Question to Peter Hickey ▴ 760
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