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Showing :
Clustering
•
reset
0
votes
0
replies
1.8k
views
displaying clustering results in TreeView or MapleTree
Microarray
Clustering
Kidney
Ovarian
probe
hopach
Microarray
Clustering
Kidney
Ovarian
14.1 years ago
Mark Baumeister
▴ 40
0
votes
1
reply
1.6k
views
HTqPCR useful for ChIP data ?
Preprocessing
Clustering
HTqPCR
Preprocessing
Clustering
HTqPCR
updated 3.3 years ago by
Javier
• 0 • written 14.1 years ago by
Guillaume Tiberi
▴ 10
0
votes
1
reply
1.8k
views
Summarising Probe Sets for Agilent 4x44 Arrays
Clustering
probe
PROcess
Clustering
probe
PROcess
updated 14.2 years ago by
Francois Pepin
▴ 80 • written 14.2 years ago by
Samantha Jane England
▴ 10
0
votes
1
reply
2.1k
views
DEseq for sample clustering
Visualization
Clustering
DESeq
Visualization
Clustering
DESeq
updated 14.2 years ago by
Wolfgang Huber
★ 13k • written 14.2 years ago by
Guest User
★ 13k
0
votes
2
replies
8.6k
views
heatmap.2 function and the scale option
Microarray
Clustering
Microarray
Clustering
updated 14.3 years ago by
Aleš Maver
▴ 80 • written 14.4 years ago by
john herbert
▴ 560
0
votes
2
replies
1.2k
views
right normalization?
Clustering
Clustering
updated 14.4 years ago by
Wolfgang Huber
★ 13k • written 14.4 years ago by
Andrea Grilli
▴ 240
0
votes
0
replies
1.3k
views
Clustering of 30,000+ genes
Microarray
Clustering
genefilter
GSCA
Microarray
Clustering
genefilter
GSCA
14.4 years ago
Thorsten Forster
▴ 10
0
votes
0
replies
2.1k
views
Can we apply WGCNA to RNA-seq dataset?
Network
Clustering
Network
Clustering
14.5 years ago
Biase, Fernando
▴ 150
0
votes
0
replies
876
views
clustering of expression data
Clustering
Clustering
14.7 years ago
sanchita 0804
▴ 50
0
votes
0
replies
788
views
error coming when testing total no of possible clusters in k-means
Clustering
Clustering
14.8 years ago
Budhayash Gautam
▴ 90
0
votes
2
replies
1.6k
views
karyotype annotation
Clustering
annotate
quantsmooth
Clustering
annotate
quantsmooth
updated 14.8 years ago by
Oosting, J. PATH
▴ 550 • written 14.8 years ago by
Nandini B
▴ 30
0
votes
1
reply
1.3k
views
karyotype annotation
Clustering
annotate
Clustering
annotate
updated 14.8 years ago by
Oosting, J. PATH
▴ 550 • written 14.8 years ago by
Nandini B
▴ 30
0
votes
1
reply
1.0k
views
Adapted clusterStab package
Clustering
clusterStab
Clustering
clusterStab
updated 14.8 years ago by
James W. MacDonald
68k • written 14.8 years ago by
Wendy Qiao
▴ 360
0
votes
0
replies
1.1k
views
[Course] CSAMA 2011: Computational Statistics for Genome Biology (Ninth Edition)
Sequencing
Microarray
Alignment
Annotation
Clustering
Cancer
Biostrings
AnnotationDbi
14.8 years ago
stefano iacus
▴ 430
0
votes
2
replies
1.3k
views
Retrieving a subset from normalized microarray data for differential test in R package, Limma
Clustering
limma
Clustering
limma
updated 14.8 years ago by
Amos Folarin
▴ 80 • written 14.8 years ago by
Arthur SHEN
▴ 10
0
votes
0
replies
1.5k
views
[Mfuzz] y-axis values
Clustering
Mfuzz
Clustering
Mfuzz
14.8 years ago
boczniak767
▴ 740
0
votes
2
replies
1.4k
views
Access the probe ids associated with each cluster
Clustering
probe
Clustering
probe
updated 14.9 years ago by
Steve Lianoglou
★ 13k • written 14.9 years ago by
Wendy Qiao
▴ 360
0
votes
2
replies
1.8k
views
DESeq variance stabilisation and clustering
Genetics
Clustering
PROcess
DESeq
Genetics
Clustering
PROcess
DESeq
updated 14.9 years ago by
Timothy Hughes
▴ 30 • written 14.9 years ago by
Timothy Hughes
▴ 20
0
votes
3
replies
1.3k
views
heatmap.2 and makeContrasts
Clustering
Clustering
updated 14.9 years ago by
Wolfgang Huber
★ 13k • written 14.9 years ago by
Supriya Munshaw
▴ 40
0
votes
1
reply
1.9k
views
hierarchial clustering
Clustering
Clustering
updated 15.1 years ago by
Thomas Girke
★ 1.7k • written 15.1 years ago by
Swati Sinha
▴ 20
0
votes
0
replies
1.5k
views
qPCR Event Calendar - winter 2010
SNP
qPCR
Genetics
Normalization
Clustering
Regression
Cancer
Breast
Xenopus laevis
probe
15.2 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
6
replies
2.2k
views
Fwd: how to plot corr between two tissues/dendrograms
Microarray
GO
Clustering
Microarray
GO
Clustering
updated 15.3 years ago by
SAURIN
★ 1.1k • written 15.3 years ago by
Sean Davis
21k
0
votes
1
reply
2.1k
views
library (sma)
Microarray
Clustering
Microarray
Clustering
updated 15.3 years ago by
James W. MacDonald
68k • written 15.3 years ago by
Yee, Sook Wah
▴ 10
0
votes
2
replies
1.3k
views
how to plot corr between two tissues/dendrograms
Microarray
GO
Clustering
Microarray
GO
Clustering
updated 15.3 years ago by
Sean Davis
21k • written 15.3 years ago by
abosco@email.arizona.edu
▴ 10
0
votes
1
reply
1.5k
views
clustering of microarray time-series data
Microarray
Clustering
limma
maSigPro
Microarray
Clustering
limma
maSigPro
updated 15.3 years ago by
avehna
▴ 240 • written 15.3 years ago by
boczniak767
▴ 740
0
votes
0
replies
2.1k
views
BioNet - interpretation of node score (Eva Benito Garagorri)
SNP
Microarray
GO
Network
Clustering
Cancer
Organism
mgug4122a
probe
limma
convert
SNP
15.4 years ago
Daniela Beißer
▴ 20
0
votes
0
replies
1.4k
views
qPCR Event Calendar - autumn/winter 2010
qPCR
Normalization
Clustering
probe
microRNA
qPCR
Normalization
Clustering
probe
microRNA
15.4 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
4
replies
1.6k
views
R/Bioc workshops at UC Riverside
Clustering
Clustering
updated 15.4 years ago by
Neel Aluru
▴ 460 • written 15.4 years ago by
Thomas Girke
★ 1.7k
0
votes
2
replies
1.4k
views
Querying clustering in heatmap.2
Clustering
Clustering
updated 15.4 years ago by
Steve Lianoglou
★ 13k • written 15.4 years ago by
Elizabeth Ashley
▴ 50
0
votes
1
reply
1.6k
views
Clustering RNA-seq profiles and DE analysis using edgeR
Normalization
Clustering
edgeR
Normalization
Clustering
edgeR
updated 15.6 years ago by
王喆
▴ 60 • written 15.6 years ago by
Gordon Smyth
53k
0
votes
1
reply
2.1k
views
Clustering RNA-seq profiles using edgeR
Normalization
Clustering
edgeR
Normalization
Clustering
edgeR
updated 15.6 years ago by
王喆
▴ 60 • written 15.6 years ago by
Gordon Smyth
53k
0
votes
1
reply
1.8k
views
TLDA data
Clustering
Cancer
PROcess
cycle
HTqPCR
Clustering
Cancer
PROcess
cycle
HTqPCR
updated 15.6 years ago by
Heidi Dvinge
★ 2.0k • written 15.7 years ago by
deepak roshan
▴ 40
0
votes
0
replies
20k
views
1000 R tutorials/Links
Sequencing
Microarray
Genetics
Visualization
Network
Bayesian
Classification
Clustering
15.7 years ago
David Lyon
▴ 340
0
votes
0
replies
871
views
Reg: Error in hopach
Clustering
Clustering
15.7 years ago
Rohit Farmer
▴ 170
0
votes
0
replies
872
views
mclustersim function
GO
Clustering
limma
GO
Clustering
limma
15.7 years ago
Guido Leoni
▴ 200
0
votes
1
reply
1.1k
views
Reg: hopach clustering
Clustering
Clustering
updated 15.7 years ago by
Wolfgang Huber
★ 13k • written 15.7 years ago by
Rohit Farmer
▴ 170
0
votes
0
replies
746
views
Collaborators
Microarray
Clustering
Cancer
Ovarian
Microarray
Clustering
Cancer
Ovarian
15.7 years ago
Alexandru Floares
▴ 10
0
votes
0
replies
743
views
kmeans clustering and gene names; was Re: Bioconductor Digest, Vol 87, Issue 10
Clustering
probe
Clustering
probe
15.7 years ago
Sean Davis
21k
0
votes
0
replies
735
views
Bioconductor Digest, Vol 87, Issue 25
Clustering
Clustering
15.7 years ago
avinash gupta
▴ 130
0
votes
13
replies
3.3k
views
Bioconductor Digest, Vol 87, Issue 10
Clustering
hopach
Clustering
hopach
updated 15.7 years ago by
Richard Pearson
▴ 160 • written 15.8 years ago by
avinash gupta
▴ 130
0
votes
0
replies
1.1k
views
Bioconductor Digest, Vol 87, Issue 17
Clustering
pcaMethods
Clustering
pcaMethods
15.7 years ago
avinash gupta
▴ 130
0
votes
0
replies
1.4k
views
Plotting trees - hclust object vs dendrogram
Clustering
Clustering
15.8 years ago
Anthony Ferrari
▴ 110
0
votes
1
reply
1.1k
views
Query regarding Clustering
Clustering
ctc
Clustering
ctc
updated 15.8 years ago by
varpal singh
▴ 120 • written 15.8 years ago by
Sean Davis
21k
0
votes
2
replies
987
views
(no subject)
Microarray
Clustering
Microarray
Clustering
updated 15.8 years ago by
Andreia Fonseca
▴ 810 • written 15.8 years ago by
varpal singh
▴ 120
0
votes
3
replies
1.2k
views
custom Affymetrix
Clustering
PROcess
Clustering
PROcess
updated 15.8 years ago by
Wolfgang Huber
★ 13k • written 15.8 years ago by
Vermesan Oana
▴ 20
0
votes
3
replies
2.4k
views
Adjusting contrast in a heatmap
Clustering
Clustering
updated 15.8 years ago by
Wolfgang Huber
★ 13k • written 15.8 years ago by
Anthony Ferrari
▴ 110
0
votes
1
reply
2.1k
views
Plotting trees - hclust object vs dendrogram
Clustering
Clustering
updated 15.8 years ago by
Wolfgang Huber
★ 13k • written 15.8 years ago by
Anthony Ferrari
▴ 110
0
votes
3
replies
1.5k
views
Reg: Different clustering methods available for affy data
Clustering
Clustering
updated 15.8 years ago by
Sean Davis
21k • written 15.8 years ago by
Rohit Farmer
▴ 170
0
votes
1
reply
2.1k
views
pvclust and distance matrices
Clustering
Clustering
15.8 years ago
Glazko, Galina
▴ 350
0
votes
0
replies
1.1k
views
stuck with affy/ limma
Clustering
genefilter
affy
limma
Clustering
genefilter
affy
limma
15.8 years ago
Maxim
▴ 170
374 results • Page
4 of 8
Recent ...
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Comment: using limma trend workflow in CAMERA
by
Gordon Smyth
53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results
by
Tikaaa2sahaaaq2c
• 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA
by
A.Barden
▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available
by
Tikaaa2sahaaaq2c
• 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Comment: Error message that there is no package called Biobase
by
DamionLedner99
• 0
thanks for sharing!!! https://cran.r-project.org/
Votes
Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
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