Showing : Clustering • reset
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Mean or median centering data
Normalization Clustering Normalization Clustering
17.8 years ago kumar s ▴ 10
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Clustering question
Clustering Clustering
17.8 years ago Srinivas Iyyer ▴ 600
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How to extract Hopach MSS value
Clustering hopach Clustering hopach
updated 17.8 years ago by 6.7k • written 17.8 years ago by ▴ 20
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Ward's linkage, agnes and hclust
Clustering Clustering
17.8 years ago Nicolas Servant ▴ 260
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SECOND ANNOUNCEMENT: IV International Course on Microarray Data Analysis
Microarray Annotation Normalization GO Visualization Classification Clustering Survival GO
17.8 years ago Ana Conesa ▴ 340
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GO graph plotting with some in color
GO Clustering graph PROcess GO Clustering graph PROcess
18.0 years ago Loren Engrav ★ 1.0k
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3
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tweaks for the heatmap ()?
Clustering marray Clustering marray
updated 18.0 years ago by ▴ 510 • written 18.0 years ago by ▴ 270
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FIRST ANNOUNCEMENT: IV International Course on Microarray Data Analysis
Microarray Annotation Normalization GO Visualization Classification Clustering Survival GO
18.0 years ago Ana Conesa ▴ 340
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1.1k
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made4, memory issues
Network Clustering Cancer Yeast made4 Network Clustering Cancer Yeast made4
18.0 years ago Aedin Culhane ▴ 510
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2.1k
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Median-Interquartile Normalization
Microarray SystemsBiology Annotation GO Preprocessing Clustering Cancer Yeast Organism GO
18.0 years ago McGee, Monnie ▴ 300
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1.2k
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clustering methods for gene expression
Microarray Clustering probe limma Microarray Clustering probe limma
18.1 years ago Donna Toleno ▴ 90
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1.2k
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R/BioC workshops in Southern California
Cheminformatics Clustering Cheminformatics Clustering
18.2 years ago Thomas Girke ★ 1.7k
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1
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1.1k
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Loop design -> inferring
GO Clustering limma GO Clustering limma
updated 18.2 years ago by ▴ 220 • written 18.3 years ago by 53k
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Distance function and gene expression standardization for clustering
Clustering Cancer Clustering Cancer
18.3 years ago Serge Eifes ▴ 90
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4
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1.0k
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Is a change in kit significant?
Clustering Cancer limma Clustering Cancer limma
updated 18.5 years ago by ★ 1.3k • written 18.5 years ago by ★ 1.9k
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3
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Correlation works, but dist() runs out of memory
Clustering Cancer Clustering Cancer
updated 18.7 years ago by 21k • written 18.7 years ago by ★ 1.9k
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1.2k
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Course*** R/S+: Fundamentals and Programming Techniques - Princeton, March 1-2
Microarray Classification Clustering Regression Microarray Classification Clustering
18.7 years ago sue@xlsolutions-corp.com ▴ 570
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4.1k
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heatmap without column's dendrogram
Clustering Clustering
updated 18.8 years ago by ★ 1.3k • written 18.8 years ago by ▴ 90
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1
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870
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pre-processing Agilent data to remove a bad sample
Microarray Clustering Microarray Clustering
updated 18.8 years ago by ★ 1.3k • written 18.8 years ago by ▴ 10
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Analysis with MBNI re-mapped (custom) CDF files
Microarray Clustering cdf probe affy affyPLM mmgmos Microarray Clustering cdf probe
18.8 years ago Richard Pearson ▴ 390
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results of justPlier vs. RMA
Clustering affy plier affyio Clustering affy plier affyio
updated 19.0 years ago by ▴ 120 • written 19.0 years ago by ▴ 360
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3
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significance of "wrong" clustering of differential genes
Clustering limma Clustering limma
updated 19.0 years ago by ★ 6.0k • written 19.0 years ago by ▴ 830
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776
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R/BioC workshops in Southern California
Clustering Clustering
19.1 years ago Thomas Girke ★ 1.7k
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1
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991
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heatmap_2
Clustering Clustering
updated 19.2 years ago by ▴ 70 • written 19.2 years ago by ▴ 270
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hclust - order of rows/columns
Clustering Clustering
19.2 years ago Lina Hultin-Rosenberg ▴ 180
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1.3k
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Analysing categorical CGH data
Clustering Cancer CGH GLAD made4 Clustering Cancer CGH GLAD made4
19.3 years ago Aedin Culhane ▴ 510
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[SPAM?] Bioconductor Digest, Vol 41, Issue 22 (Out of Office)
SNP Microarray Annotation GO Network Clustering Survival Cancer hgu133a cdf probe affy
19.3 years ago Todd Nick ▴ 10
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4.8k
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Error: cannot allocate vector of size ...
Clustering Clustering
updated 19.3 years ago by 68k • written 19.3 years ago by ▴ 80
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Analysing categorical CGH data
Clustering Cancer CGH made4 Clustering Cancer CGH made4
19.3 years ago Richard Birnie ▴ 10
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last call for Boston bioc Training, 13-15 july, content revised
Annotation GO Preprocessing Clustering Yeast probe RSNPper biomaRt Annotation GO Yeast
19.4 years ago Vincent J. Carey, Jr. 6.7k
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display goCluster graph with specific go term
GO Visualization Clustering graph goCluster GO Visualization Clustering graph goCluster
19.4 years ago Tabare Mourot ▴ 100
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1.1k
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hopach and heatmap
Clustering hopach Clustering hopach
19.4 years ago Ivan Baxter ▴ 60
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1
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1.7k
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2 Courses Near You - (1) Introduction to R/S+ programming: Microarrays Analysis and Bioconductor, (2) R/Splus Fundamentals and Programming Techniques
Visualization Clustering Visualization Clustering
updated 19.4 years ago by ▴ 130 • written 19.4 years ago by ▴ 570
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1.3k
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limma: get all sig genes from multiple contrasts
Clustering limma Clustering limma
updated 19.4 years ago by ▴ 270 • written 19.4 years ago by ▴ 60
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[heatmap] different distance functions for columns and for rows
Clustering Clustering
19.5 years ago Ron Ophir ▴ 270
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1.1k
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[heatmap] different distance functions for columns and for rows
Clustering Clustering
19.5 years ago Sean Davis 21k
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1.4k
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[heatmap] different distance functions for columns and for rows
Clustering Clustering
updated 19.5 years ago by 21k • written 19.5 years ago by ▴ 270
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Question regarding handling technical replicates for Affy arrays
GO Clustering affy limma GO Clustering affy limma
19.5 years ago Gordon Smyth 53k
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Question regarding handling technical replicates for Affy arrays
GO Clustering affy limma GO Clustering affy limma
19.5 years ago noel0925@sbcglobal.net ▴ 90
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Bioconductor 1.8 for R 2.3.0 is released!
BiocViews aCGH SNP Microarray Annotation GO Clustering Cancer Yeast cdf probe RMAGEML
19.6 years ago Seth Falcon ★ 7.4k
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hopach package for clustering
Clustering TimeCourse timecourse Clustering TimeCourse timecourse
updated 19.7 years ago by ▴ 780 • written 19.7 years ago by ▴ 250
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clustering question
Clustering Clustering
updated 19.7 years ago by ★ 6.0k • written 19.7 years ago by ▴ 890
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3
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3.1k
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Inherits(x,"data.frame") error in SamR
Microarray Normalization Preprocessing Bayesian Clustering TimeCourse Cancer affy vsn LPE
19.8 years ago McGee, Monnie ▴ 300
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3
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Timeseries loop design analysis using Limma or Maanova?
Bayesian Clustering TimeCourse timecourse oligo Bayesian Clustering TimeCourse timecourse
19.8 years ago Pete ▴ 70
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2
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1.2k
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Hier.Clustering: group size effect
Clustering Clustering
updated 19.8 years ago by ▴ 140 • written 19.8 years ago by ▴ 310
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1.3k
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LIMMA, SAM & clustering
Visualization Clustering limma Visualization Clustering limma
updated 19.8 years ago by 68k • written 19.8 years ago by ▴ 100
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1
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1.3k
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average linkage clustering in Eisen's Cluster vs. that in hclust
Clustering Clustering
updated 20.0 years ago by ▴ 100 • written 20.0 years ago by ▴ 290
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1
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1.6k
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Again on heatmap clusters - dChip style, Pearson's distance. Which solutions ?
Clustering PROcess Clustering PROcess
updated 20.0 years ago by ★ 1.8k • written 20.0 years ago by ▴ 540
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1
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1.3k
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omit row dendrogram in heatmap
Clustering Clustering
updated 20.0 years ago by ▴ 140 • written 20.0 years ago by ▴ 510
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1.6k
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Bioinformatics Jobs at ArraDx
Microarray Annotation Normalization Clustering Cancer Microarray Annotation Normalization
20.0 years ago Proutski, Vitali ▴ 10
374 results • Page 6 of 8
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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