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Clustering
•
reset
0
votes
0
replies
2.3k
views
Mean or median centering data
Normalization
Clustering
Normalization
Clustering
17.8 years ago
kumar s
▴ 10
0
votes
0
replies
876
views
Clustering question
Clustering
Clustering
17.8 years ago
Srinivas Iyyer
▴ 600
0
votes
1
reply
1.2k
views
How to extract Hopach MSS value
Clustering
hopach
Clustering
hopach
updated 17.8 years ago by
Vincent J. Carey, Jr.
6.7k • written 17.8 years ago by
Prateek Singh
▴ 20
0
votes
0
replies
1.7k
views
Ward's linkage, agnes and hclust
Clustering
Clustering
17.8 years ago
Nicolas Servant
▴ 260
0
votes
0
replies
1.4k
views
SECOND ANNOUNCEMENT: IV International Course on Microarray Data Analysis
Microarray
Annotation
Normalization
GO
Visualization
Classification
Clustering
Survival
GO
17.8 years ago
Ana Conesa
▴ 340
0
votes
0
replies
894
views
GO graph plotting with some in color
GO
Clustering
graph
PROcess
GO
Clustering
graph
PROcess
18.0 years ago
Loren Engrav
★ 1.0k
0
votes
3
replies
1.8k
views
tweaks for the heatmap ()?
Clustering
marray
Clustering
marray
updated 18.0 years ago by
Aedin Culhane
▴ 510 • written 18.0 years ago by
Simon Lin
▴ 270
0
votes
0
replies
1.5k
views
FIRST ANNOUNCEMENT: IV International Course on Microarray Data Analysis
Microarray
Annotation
Normalization
GO
Visualization
Classification
Clustering
Survival
GO
18.0 years ago
Ana Conesa
▴ 340
0
votes
0
replies
1.1k
views
made4, memory issues
Network
Clustering
Cancer
Yeast
made4
Network
Clustering
Cancer
Yeast
made4
18.0 years ago
Aedin Culhane
▴ 510
0
votes
0
replies
2.1k
views
Median-Interquartile Normalization
Microarray
SystemsBiology
Annotation
GO
Preprocessing
Clustering
Cancer
Yeast
Organism
GO
18.0 years ago
McGee, Monnie
▴ 300
0
votes
0
replies
1.2k
views
clustering methods for gene expression
Microarray
Clustering
probe
limma
Microarray
Clustering
probe
limma
18.1 years ago
Donna Toleno
▴ 90
0
votes
0
replies
1.2k
views
R/BioC workshops in Southern California
Cheminformatics
Clustering
Cheminformatics
Clustering
18.2 years ago
Thomas Girke
★ 1.7k
0
votes
1
reply
1.1k
views
Loop design -> inferring
GO
Clustering
limma
GO
Clustering
limma
updated 18.2 years ago by
Yannick Wurm
▴ 220 • written 18.3 years ago by
Gordon Smyth
53k
0
votes
0
replies
1.1k
views
Distance function and gene expression standardization for clustering
Clustering
Cancer
Clustering
Cancer
18.3 years ago
Serge Eifes
▴ 90
0
votes
4
replies
1.0k
views
Is a change in kit significant?
Clustering
Cancer
limma
Clustering
Cancer
limma
updated 18.5 years ago by
Francois Pepin
★ 1.3k • written 18.5 years ago by
Daniel Brewer
★ 1.9k
0
votes
3
replies
2.0k
views
Correlation works, but dist() runs out of memory
Clustering
Cancer
Clustering
Cancer
updated 18.7 years ago by
Sean Davis
21k • written 18.7 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
1.2k
views
Course*** R/S+: Fundamentals and Programming Techniques - Princeton, March 1-2
Microarray
Classification
Clustering
Regression
Microarray
Classification
Clustering
18.7 years ago
sue@xlsolutions-corp.com
▴ 570
0
votes
1
reply
4.1k
views
heatmap without column's dendrogram
Clustering
Clustering
updated 18.8 years ago by
Francois Pepin
★ 1.3k • written 18.8 years ago by
Federico Abascal
▴ 90
0
votes
1
reply
870
views
pre-processing Agilent data to remove a bad sample
Microarray
Clustering
Microarray
Clustering
updated 18.8 years ago by
Francois Pepin
★ 1.3k • written 18.8 years ago by
Stephen Rudd
▴ 10
0
votes
0
replies
1.2k
views
Analysis with MBNI re-mapped (custom) CDF files
Microarray
Clustering
cdf
probe
affy
affyPLM
mmgmos
Microarray
Clustering
cdf
probe
18.8 years ago
Richard Pearson
▴ 390
0
votes
2
replies
1.8k
views
results of justPlier vs. RMA
Clustering
affy
plier
affyio
Clustering
affy
plier
affyio
updated 19.0 years ago by
Michal Okoniewski
▴ 120 • written 19.0 years ago by
He, Yiwen NIH/CIT
▴ 360
0
votes
3
replies
1.6k
views
significance of "wrong" clustering of differential genes
Clustering
limma
Clustering
limma
updated 19.0 years ago by
Naomi Altman
★ 6.0k • written 19.0 years ago by
Benjamin Otto
▴ 830
0
votes
0
replies
776
views
R/BioC workshops in Southern California
Clustering
Clustering
19.1 years ago
Thomas Girke
★ 1.7k
0
votes
1
reply
991
views
heatmap_2
Clustering
Clustering
updated 19.2 years ago by
Marc Saric
▴ 70 • written 19.2 years ago by
Ron Ophir
▴ 270
0
votes
0
replies
1.7k
views
hclust - order of rows/columns
Clustering
Clustering
19.2 years ago
Lina Hultin-Rosenberg
▴ 180
0
votes
0
replies
1.3k
views
Analysing categorical CGH data
Clustering
Cancer
CGH
GLAD
made4
Clustering
Cancer
CGH
GLAD
made4
19.3 years ago
Aedin Culhane
▴ 510
0
votes
0
replies
1.3k
views
[SPAM?] Bioconductor Digest, Vol 41, Issue 22 (Out of Office)
SNP
Microarray
Annotation
GO
Network
Clustering
Survival
Cancer
hgu133a
cdf
probe
affy
19.3 years ago
Todd Nick
▴ 10
0
votes
3
replies
4.8k
views
Error: cannot allocate vector of size ...
Clustering
Clustering
updated 19.3 years ago by
James W. MacDonald
68k • written 19.3 years ago by
Wall, Dennis Paul
▴ 80
0
votes
0
replies
1.1k
views
Analysing categorical CGH data
Clustering
Cancer
CGH
made4
Clustering
Cancer
CGH
made4
19.3 years ago
Richard Birnie
▴ 10
0
votes
0
replies
1.1k
views
last call for Boston bioc Training, 13-15 july, content revised
Annotation
GO
Preprocessing
Clustering
Yeast
probe
RSNPper
biomaRt
Annotation
GO
Yeast
19.4 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
0
replies
894
views
display goCluster graph with specific go term
GO
Visualization
Clustering
graph
goCluster
GO
Visualization
Clustering
graph
goCluster
19.4 years ago
Tabare Mourot
▴ 100
0
votes
0
replies
1.1k
views
hopach and heatmap
Clustering
hopach
Clustering
hopach
19.4 years ago
Ivan Baxter
▴ 60
0
votes
1
reply
1.7k
views
2 Courses Near You - (1) Introduction to R/S+ programming: Microarrays Analysis and Bioconductor, (2) R/Splus Fundamentals and Programming Techniques
Visualization
Clustering
Visualization
Clustering
updated 19.4 years ago by
Francois Collin
▴ 130 • written 19.4 years ago by
sue@xlsolutions-corp.com
▴ 570
0
votes
4
replies
1.3k
views
limma: get all sig genes from multiple contrasts
Clustering
limma
Clustering
limma
updated 19.4 years ago by
kfbargad@ehu.es
▴ 270 • written 19.4 years ago by
Ivan Baxter
▴ 60
0
votes
0
replies
1.2k
views
[heatmap] different distance functions for columns and for rows
Clustering
Clustering
19.5 years ago
Ron Ophir
▴ 270
0
votes
0
replies
1.1k
views
[heatmap] different distance functions for columns and for rows
Clustering
Clustering
19.5 years ago
Sean Davis
21k
0
votes
1
reply
1.4k
views
[heatmap] different distance functions for columns and for rows
Clustering
Clustering
updated 19.5 years ago by
Sean Davis
21k • written 19.5 years ago by
Ron Ophir
▴ 270
0
votes
0
replies
984
views
Question regarding handling technical replicates for Affy arrays
GO
Clustering
affy
limma
GO
Clustering
affy
limma
19.5 years ago
Gordon Smyth
53k
0
votes
0
replies
1.2k
views
Question regarding handling technical replicates for Affy arrays
GO
Clustering
affy
limma
GO
Clustering
affy
limma
19.5 years ago
noel0925@sbcglobal.net
▴ 90
0
votes
0
replies
1.6k
views
Bioconductor 1.8 for R 2.3.0 is released!
BiocViews
aCGH
SNP
Microarray
Annotation
GO
Clustering
Cancer
Yeast
cdf
probe
RMAGEML
19.6 years ago
Seth Falcon
★ 7.4k
0
votes
1
reply
1.0k
views
hopach package for clustering
Clustering
TimeCourse
timecourse
Clustering
TimeCourse
timecourse
updated 19.7 years ago by
Ting-Yuan Liu FHCRC
▴ 780 • written 19.7 years ago by
Yanqin Yang
▴ 250
0
votes
6
replies
2.0k
views
clustering question
Clustering
Clustering
updated 19.7 years ago by
Naomi Altman
★ 6.0k • written 19.7 years ago by
Kimpel, Mark W
▴ 890
0
votes
3
replies
3.1k
views
Inherits(x,"data.frame") error in SamR
Microarray
Normalization
Preprocessing
Bayesian
Clustering
TimeCourse
Cancer
affy
vsn
LPE
19.8 years ago
McGee, Monnie
▴ 300
0
votes
3
replies
2.1k
views
Timeseries loop design analysis using Limma or Maanova?
Bayesian
Clustering
TimeCourse
timecourse
oligo
Bayesian
Clustering
TimeCourse
timecourse
19.8 years ago
Pete
▴ 70
0
votes
2
replies
1.2k
views
Hier.Clustering: group size effect
Clustering
Clustering
updated 19.8 years ago by
Kevin R. Coombes
▴ 140 • written 19.8 years ago by
Heike Pospisil
▴ 310
0
votes
1
reply
1.3k
views
LIMMA, SAM & clustering
Visualization
Clustering
limma
Visualization
Clustering
limma
updated 19.8 years ago by
James W. MacDonald
68k • written 19.8 years ago by
daniela.marconi@libero.it
▴ 100
0
votes
1
reply
1.3k
views
average linkage clustering in Eisen's Cluster vs. that in hclust
Clustering
Clustering
updated 20.0 years ago by
Antoine Lucas
▴ 100 • written 20.0 years ago by
Wittner, Ben
▴ 290
0
votes
1
reply
1.6k
views
Again on heatmap clusters - dChip style, Pearson's distance. Which solutions ?
Clustering
PROcess
Clustering
PROcess
updated 20.0 years ago by
Adaikalavan Ramasamy
★ 1.8k • written 20.0 years ago by
Giulio Di Giovanni
▴ 540
0
votes
1
reply
1.3k
views
omit row dendrogram in heatmap
Clustering
Clustering
updated 20.0 years ago by
Lourdes Peña Castillo
▴ 140 • written 20.0 years ago by
Georg Otto
▴ 510
0
votes
0
replies
1.6k
views
Bioinformatics Jobs at ArraDx
Microarray
Annotation
Normalization
Clustering
Cancer
Microarray
Annotation
Normalization
20.0 years ago
Proutski, Vitali
▴ 10
374 results • Page
6 of 8
Recent ...
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
by
Matthew Thornton
▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated
by
RalphSavage99
• 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2
by
shepherl
4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed.
by
Kevin Blighe
★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot
by
Kevin Blighe
★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
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Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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