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Clustering
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0
votes
0
replies
2.3k
views
Mean or median centering data
Normalization
Clustering
Normalization
Clustering
18.0 years ago
kumar s
▴ 10
0
votes
0
replies
898
views
Clustering question
Clustering
Clustering
18.0 years ago
Srinivas Iyyer
▴ 600
0
votes
1
reply
1.2k
views
How to extract Hopach MSS value
Clustering
hopach
Clustering
hopach
updated 18.0 years ago by
Vincent J. Carey, Jr.
6.7k • written 18.0 years ago by
Prateek Singh
▴ 20
0
votes
0
replies
1.8k
views
Ward's linkage, agnes and hclust
Clustering
Clustering
18.0 years ago
Nicolas Servant
▴ 260
0
votes
0
replies
1.5k
views
SECOND ANNOUNCEMENT: IV International Course on Microarray Data Analysis
Microarray
Annotation
Normalization
GO
Visualization
Classification
Clustering
Survival
GO
18.1 years ago
Ana Conesa
▴ 340
0
votes
0
replies
924
views
GO graph plotting with some in color
GO
Clustering
graph
PROcess
GO
Clustering
graph
PROcess
18.2 years ago
Loren Engrav
★ 1.0k
0
votes
3
replies
1.8k
views
tweaks for the heatmap ()?
Clustering
marray
Clustering
marray
updated 18.2 years ago by
Aedin Culhane
▴ 510 • written 18.3 years ago by
Simon Lin
▴ 270
0
votes
0
replies
1.6k
views
FIRST ANNOUNCEMENT: IV International Course on Microarray Data Analysis
Microarray
Annotation
Normalization
GO
Visualization
Classification
Clustering
Survival
GO
18.2 years ago
Ana Conesa
▴ 340
0
votes
0
replies
1.2k
views
made4, memory issues
Network
Clustering
Cancer
Yeast
made4
Network
Clustering
Cancer
Yeast
made4
18.3 years ago
Aedin Culhane
▴ 510
0
votes
0
replies
2.1k
views
Median-Interquartile Normalization
Microarray
SystemsBiology
Annotation
GO
Preprocessing
Clustering
Cancer
Yeast
Organism
GO
18.3 years ago
McGee, Monnie
▴ 300
0
votes
0
replies
1.2k
views
clustering methods for gene expression
Microarray
Clustering
probe
limma
Microarray
Clustering
probe
limma
18.3 years ago
Donna Toleno
▴ 90
0
votes
0
replies
1.2k
views
R/BioC workshops in Southern California
Cheminformatics
Clustering
Cheminformatics
Clustering
18.4 years ago
Thomas Girke
★ 1.7k
0
votes
1
reply
1.1k
views
Loop design -> inferring
GO
Clustering
limma
GO
Clustering
limma
updated 18.5 years ago by
Yannick Wurm
▴ 220 • written 18.5 years ago by
Gordon Smyth
53k
0
votes
0
replies
1.1k
views
Distance function and gene expression standardization for clustering
Clustering
Cancer
Clustering
Cancer
18.5 years ago
Serge Eifes
▴ 90
0
votes
4
replies
1.1k
views
Is a change in kit significant?
Clustering
Cancer
limma
Clustering
Cancer
limma
updated 18.8 years ago by
Francois Pepin
★ 1.3k • written 18.8 years ago by
Daniel Brewer
★ 1.9k
0
votes
3
replies
2.1k
views
Correlation works, but dist() runs out of memory
Clustering
Cancer
Clustering
Cancer
updated 18.9 years ago by
Sean Davis
21k • written 18.9 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
1.2k
views
Course*** R/S+: Fundamentals and Programming Techniques - Princeton, March 1-2
Microarray
Classification
Clustering
Regression
Microarray
Classification
Clustering
19.0 years ago
sue@xlsolutions-corp.com
▴ 570
0
votes
1
reply
4.2k
views
heatmap without column's dendrogram
Clustering
Clustering
updated 19.0 years ago by
Francois Pepin
★ 1.3k • written 19.0 years ago by
Federico Abascal
▴ 90
0
votes
1
reply
903
views
pre-processing Agilent data to remove a bad sample
Microarray
Clustering
Microarray
Clustering
updated 19.0 years ago by
Francois Pepin
★ 1.3k • written 19.0 years ago by
Stephen Rudd
▴ 10
0
votes
0
replies
1.3k
views
Analysis with MBNI re-mapped (custom) CDF files
Microarray
Clustering
cdf
probe
affy
affyPLM
mmgmos
Microarray
Clustering
cdf
probe
19.0 years ago
Richard Pearson
▴ 390
0
votes
2
replies
1.9k
views
results of justPlier vs. RMA
Clustering
affy
plier
affyio
Clustering
affy
plier
affyio
updated 19.2 years ago by
Michal Okoniewski
▴ 120 • written 19.3 years ago by
He, Yiwen NIH/CIT
▴ 360
0
votes
3
replies
1.7k
views
significance of "wrong" clustering of differential genes
Clustering
limma
Clustering
limma
updated 19.2 years ago by
Naomi Altman
★ 6.0k • written 19.2 years ago by
Benjamin Otto
▴ 830
0
votes
0
replies
797
views
R/BioC workshops in Southern California
Clustering
Clustering
19.3 years ago
Thomas Girke
★ 1.7k
0
votes
1
reply
1.0k
views
heatmap_2
Clustering
Clustering
updated 19.4 years ago by
Marc Saric
▴ 70 • written 19.4 years ago by
Ron Ophir
▴ 270
0
votes
0
replies
1.7k
views
hclust - order of rows/columns
Clustering
Clustering
19.4 years ago
Lina Hultin-Rosenberg
▴ 180
0
votes
0
replies
1.4k
views
Analysing categorical CGH data
Clustering
Cancer
CGH
GLAD
made4
Clustering
Cancer
CGH
GLAD
made4
19.5 years ago
Aedin Culhane
▴ 510
0
votes
0
replies
1.4k
views
[SPAM?] Bioconductor Digest, Vol 41, Issue 22 (Out of Office)
SNP
Microarray
Annotation
GO
Network
Clustering
Survival
Cancer
hgu133a
cdf
probe
affy
19.6 years ago
Todd Nick
▴ 10
0
votes
3
replies
5.0k
views
Error: cannot allocate vector of size ...
Clustering
Clustering
updated 19.6 years ago by
James W. MacDonald
68k • written 19.6 years ago by
Wall, Dennis Paul
▴ 80
0
votes
0
replies
1.2k
views
Analysing categorical CGH data
Clustering
Cancer
CGH
made4
Clustering
Cancer
CGH
made4
19.6 years ago
Richard Birnie
▴ 10
0
votes
0
replies
1.1k
views
last call for Boston bioc Training, 13-15 july, content revised
Annotation
GO
Preprocessing
Clustering
Yeast
probe
RSNPper
biomaRt
Annotation
GO
Yeast
19.6 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
0
replies
929
views
display goCluster graph with specific go term
GO
Visualization
Clustering
graph
goCluster
GO
Visualization
Clustering
graph
goCluster
19.6 years ago
Tabare Mourot
▴ 100
0
votes
0
replies
1.2k
views
hopach and heatmap
Clustering
hopach
Clustering
hopach
19.6 years ago
Ivan Baxter
▴ 60
0
votes
1
reply
1.8k
views
2 Courses Near You - (1) Introduction to R/S+ programming: Microarrays Analysis and Bioconductor, (2) R/Splus Fundamentals and Programming Techniques
Visualization
Clustering
Visualization
Clustering
updated 19.7 years ago by
Francois Collin
▴ 130 • written 19.7 years ago by
sue@xlsolutions-corp.com
▴ 570
0
votes
4
replies
1.4k
views
limma: get all sig genes from multiple contrasts
Clustering
limma
Clustering
limma
updated 19.7 years ago by
kfbargad@ehu.es
▴ 270 • written 19.7 years ago by
Ivan Baxter
▴ 60
0
votes
0
replies
1.3k
views
[heatmap] different distance functions for columns and for rows
Clustering
Clustering
19.7 years ago
Ron Ophir
▴ 270
0
votes
0
replies
1.1k
views
[heatmap] different distance functions for columns and for rows
Clustering
Clustering
19.7 years ago
Sean Davis
21k
0
votes
1
reply
1.4k
views
[heatmap] different distance functions for columns and for rows
Clustering
Clustering
updated 19.7 years ago by
Sean Davis
21k • written 19.7 years ago by
Ron Ophir
▴ 270
0
votes
0
replies
1.0k
views
Question regarding handling technical replicates for Affy arrays
GO
Clustering
affy
limma
GO
Clustering
affy
limma
19.7 years ago
Gordon Smyth
53k
0
votes
0
replies
1.3k
views
Question regarding handling technical replicates for Affy arrays
GO
Clustering
affy
limma
GO
Clustering
affy
limma
19.7 years ago
noel0925@sbcglobal.net
▴ 90
0
votes
0
replies
1.7k
views
Bioconductor 1.8 for R 2.3.0 is released!
BiocViews
aCGH
SNP
Microarray
Annotation
GO
Clustering
Cancer
Yeast
cdf
probe
RMAGEML
19.8 years ago
Seth Falcon
★ 7.4k
0
votes
1
reply
1.1k
views
hopach package for clustering
Clustering
TimeCourse
timecourse
Clustering
TimeCourse
timecourse
updated 19.9 years ago by
Ting-Yuan Liu FHCRC
▴ 780 • written 19.9 years ago by
Yanqin Yang
▴ 250
0
votes
6
replies
2.1k
views
clustering question
Clustering
Clustering
updated 20.0 years ago by
Naomi Altman
★ 6.0k • written 20.0 years ago by
Kimpel, Mark W
▴ 890
0
votes
3
replies
3.2k
views
Inherits(x,"data.frame") error in SamR
Microarray
Normalization
Preprocessing
Bayesian
Clustering
TimeCourse
Cancer
affy
vsn
LPE
20.0 years ago
McGee, Monnie
▴ 300
0
votes
3
replies
2.1k
views
Timeseries loop design analysis using Limma or Maanova?
Bayesian
Clustering
TimeCourse
timecourse
oligo
Bayesian
Clustering
TimeCourse
timecourse
20.0 years ago
Pete
▴ 70
0
votes
2
replies
1.2k
views
Hier.Clustering: group size effect
Clustering
Clustering
updated 20.0 years ago by
Kevin R. Coombes
▴ 140 • written 20.0 years ago by
Heike Pospisil
▴ 310
0
votes
1
reply
1.4k
views
LIMMA, SAM & clustering
Visualization
Clustering
limma
Visualization
Clustering
limma
updated 20.0 years ago by
James W. MacDonald
68k • written 20.0 years ago by
daniela.marconi@libero.it
▴ 100
0
votes
1
reply
1.4k
views
average linkage clustering in Eisen's Cluster vs. that in hclust
Clustering
Clustering
updated 20.2 years ago by
Antoine Lucas
▴ 100 • written 20.2 years ago by
Wittner, Ben
▴ 290
0
votes
1
reply
1.7k
views
Again on heatmap clusters - dChip style, Pearson's distance. Which solutions ?
Clustering
PROcess
Clustering
PROcess
updated 20.2 years ago by
Adaikalavan Ramasamy
★ 1.8k • written 20.2 years ago by
Giulio Di Giovanni
▴ 540
0
votes
1
reply
1.4k
views
omit row dendrogram in heatmap
Clustering
Clustering
updated 20.2 years ago by
Lourdes Peña Castillo
▴ 140 • written 20.2 years ago by
Georg Otto
▴ 510
0
votes
0
replies
1.6k
views
Bioinformatics Jobs at ArraDx
Microarray
Annotation
Normalization
Clustering
Cancer
Microarray
Annotation
Normalization
20.2 years ago
Proutski, Vitali
▴ 10
374 results • Page
6 of 8
Recent ...
Replies
Comment: soGGi error
by
shepherl
4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA
by
Gordon Smyth
53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results
by
Tikaaa2sahaaaq2c
• 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA
by
A.Barden
▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available
by
Tikaaa2sahaaaq2c
• 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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