Showing : Clustering • reset
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'Heat Map for Genes in Dataset' in the '(project name).global.plots.pdf' output of the R-GSEA code
Genetics Clustering DECIPHER Genetics Clustering DECIPHER
15.6 years ago Radek Blatny ▴ 60
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1.4k
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stuck with affy/ limma
Clustering affy limma Clustering affy limma
updated 15.6 years ago by 68k • written 15.6 years ago by ▴ 170
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794
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Clustering
Clustering Clustering
15.6 years ago Chintanu ▴ 310
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stuck with affy/limma
Clustering affy limma Clustering affy limma
15.6 years ago Maxim ▴ 170
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1.1k
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Kmeans help
Clustering Clustering
updated 15.7 years ago by ▴ 110 • written 15.7 years ago by ▴ 30
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5
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2.0k
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Best options for cross validation machine learning
Microarray Clustering Cancer Microarray Clustering Cancer
updated 15.8 years ago by ▴ 450 • written 15.8 years ago by ★ 1.9k
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709
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R/Bioc workshops at UC Riverside
Clustering Clustering
15.8 years ago Thomas Girke ★ 1.7k
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4
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1.9k
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Positive correlation between dye-swap technical replicates
Normalization Clustering probe limma GLAD Normalization Clustering probe limma GLAD
15.8 years ago Michał Góralski ▴ 40
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4
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9.4k
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Agilent 2-color Microarray data analysis tutorial
Microarray Visualization Clustering Microarray Visualization Clustering
updated 15.8 years ago by 25k • written 15.8 years ago by ▴ 140
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2
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1.4k
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Heatmaps of K-clusters don't Match Expression
Clustering Clustering
updated 15.9 years ago by ★ 13k • written 15.9 years ago by ▴ 230
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739
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small bug in overview function of made4
GO Clustering GO Clustering
16.0 years ago Jenny Drnevich ★ 2.0k
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3
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1.4k
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Fwd: How to decide which distance metric to use for micoarray data clustering?
Microarray Clustering bioDist Microarray Clustering bioDist
updated 16.1 years ago by ★ 13k • written 16.1 years ago by ▴ 950
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3
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microarray analysis in R without replicates
Microarray Clustering Microarray Clustering
updated 16.2 years ago by ▴ 630 • written 16.2 years ago by ▴ 60
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1.6k
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Questions regarding hclust parameters and output
Clustering bioDist Clustering bioDist
16.2 years ago Dana Sevak ▴ 10
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931
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Where classification worked better ?
Clustering Clustering
updated 16.2 years ago by ▴ 570 • written 16.2 years ago by ▴ 80
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2
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3.0k
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Batch effect in limma
Clustering Clustering
updated 16.2 years ago by 68k • written 16.2 years ago by ▴ 240
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1
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991
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Map gene expression to location in genome.
Clustering Clustering
updated 16.3 years ago by 16k • written 16.3 years ago by ★ 1.3k
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1
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1.5k
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(no subject)
Pathways Clustering goTools GOstats Pathways Clustering goTools GOstats
updated 16.3 years ago by ▴ 270 • written 16.3 years ago by ▴ 300
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1.0k
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Correlating all pairs of genes in a gene expression matrix?
Clustering Clustering
updated 16.5 years ago by ★ 1.7k • written 16.5 years ago by ▴ 40
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1.8k
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Pearson Correlation & log transformed data.
Clustering Clustering
16.6 years ago Paul Geeleher ★ 1.3k
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1
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1.8k
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Mfuzz package
Clustering Mfuzz Clustering Mfuzz
updated 16.6 years ago by 68k • written 16.6 years ago by ▴ 140
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1
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1.3k
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Need help with MLearn in MLInterfaces package
Clustering MLInterfaces Clustering MLInterfaces
updated 16.7 years ago by 6.7k • written 16.7 years ago by ▴ 10
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1.5k
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Help on: Resizing the plot of a dendrogram when plotting clusters
Clustering Clustering
16.7 years ago maon yskmohc ▴ 20
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4
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6.9k
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Heatmap without using clustering result
Clustering Mfuzz Clustering Mfuzz
updated 16.7 years ago by ▴ 60 • written 16.7 years ago by ▴ 430
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1
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1.6k
views
Group-wise gcrma normalization
Microarray Normalization Clustering zebrafish probe gcrma Microarray Normalization probe
updated 16.7 years ago by ★ 6.5k • written 16.7 years ago by ▴ 30
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0
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832
views
R/BioC workshops in Southern California
Sequencing Clustering Sequencing Clustering
16.8 years ago Thomas Girke ★ 1.7k
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2
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1.6k
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Affinity propagation clustering in R
Clustering Clustering
updated 16.9 years ago by ★ 2.3k • written 16.9 years ago by ▴ 100
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1.2k
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2009 Courses***R/S-PLUS Advanced & Fundamentals - January 2009. Also check out our New&Emerging Courses.
Clustering Survival Clustering Survival
16.9 years ago sue@xlsolutions-corp.com ▴ 570
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1.1k
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Visualising SOM output as U-matrix in R\Bioconductor
Clustering Clustering
16.9 years ago Paul Geeleher ★ 1.3k
0
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727
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converting MA to a text file
GO Clustering GO Clustering
updated 17.0 years ago by 21k • written 17.0 years ago by ▴ 40
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1
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1.3k
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Extreme weighting values using arrayWeights
Clustering affy limma Clustering affy limma
updated 17.1 years ago by ▴ 50 • written 17.1 years ago by ▴ 300
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1.1k
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Microarray pattern standardization and fold change cut-offs
Clustering Clustering
updated 17.2 years ago by 21k • written 17.2 years ago by ▴ 40
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1
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2.4k
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what is the best baseline transformation method before clustering
GO Clustering probe affy gcrma GeneSpring GO Clustering probe affy gcrma GeneSpring
updated 17.2 years ago by 21k • written 17.2 years ago by ▴ 270
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4
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3.2k
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How to get and save normalized data from limma
Clustering limma Clustering limma
17.2 years ago Wang, Jixin ▴ 130
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1
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977
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Limma: What to choose?
Clustering limma Clustering limma
updated 17.2 years ago by 68k • written 17.2 years ago by ▴ 700
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1.1k
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HOPACH and .cdt which doesn't work with javatreeview
Clustering hopach Clustering hopach
17.2 years ago Sébastien Tourlet ▴ 20
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1.4k
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Hierarchical clustering of RMA data
Normalization Clustering Normalization Clustering
updated 17.2 years ago by ▴ 50 • written 17.2 years ago by ▴ 10
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813
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Extracting Intensities from LIMMA with Reference Design
Microarray Clustering Microarray Clustering
17.3 years ago Lin Huffman ▴ 20
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1.7k
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Adding a text label to the classvec colour bar in heatplot
Clustering Cancer graph GLAD Clustering Cancer graph GLAD
updated 17.3 years ago by ▴ 460 • written 17.3 years ago by ★ 6.5k
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4
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2.0k
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Adding a text label to the classvec colour bar in heatplot
Clustering Cancer graph Clustering Cancer graph
updated 17.3 years ago by ▴ 460 • written 17.3 years ago by ▴ 510
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1.4k
views
HOPACH clustering of genes
Clustering hopach Clustering hopach
updated 17.3 years ago by ▴ 20 • written 17.3 years ago by ▴ 100
2
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4
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3.6k
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Your thoughts on Limma Array Weights?
Clustering limma Clustering limma
updated 17.4 years ago by 53k • written 17.4 years ago by ▴ 970
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0
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1.1k
views
R/BioC workshops in Southern California
Cheminformatics Clustering Cheminformatics Clustering
17.4 years ago Thomas Girke ★ 1.7k
0
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2
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2.1k
views
row clustering in heatmap.2
GO Clustering GO Clustering
updated 17.4 years ago by ▴ 400 • written 17.4 years ago by ▴ 410
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4
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1.5k
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lumiHumanAll.db, GOstats
Clustering GOstats Clustering GOstats
updated 17.4 years ago by ★ 3.6k • written 17.4 years ago by ▴ 270
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1
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1.0k
views
lumiHumanAll.db, Gostats
Annotation Clustering probe convert Annotation Clustering probe convert
updated 17.4 years ago by ▴ 270 • written 17.4 years ago by ★ 1.2k
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974
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Why makeoutput() function is not included in hopach 1.4.3 version
Microarray Clustering hopach Microarray Clustering hopach
17.5 years ago Suprabhath Reddy ▴ 10
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1
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1.7k
views
BioC 2.2 now available
SNP Microarray Genetics Annotation Preprocessing Bayesian Clustering Infrastructure Cancer
updated 17.5 years ago by ★ 1.6k • written 17.5 years ago by 25k
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1
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1.6k
views
calculating median expression between to identical gene names in data frame
Clustering Cancer affy Clustering Cancer affy
updated 17.7 years ago by ★ 1.8k • written 17.7 years ago by ▴ 600
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1
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1.2k
views
ExpressionSet class and problems with phenotype and metadata matrices
Annotation Clustering hgu95av2 Annotation Clustering hgu95av2
updated 17.7 years ago by 68k • written 17.7 years ago by ▴ 60
374 results • Page 5 of 8
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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Popular Question to Hervé Pagès 16k
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Scholar to James W. MacDonald 68k
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