Bioconductor DDS

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345

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DESeqDataSetFromMatrix dds DESeq2

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by naomi.croft • 0

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475

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Celegans DESeq2 dds Errorinseq_len(length(idx)-1)

updated 17 months ago by James W. MacDonald 65k • written 18 months ago by Enzo.Scifo • 0

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1.1k

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deseq2 cooks distance dds

updated 5.7 years ago by Michael Love 41k • written 5.7 years ago by ipso • 0

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996

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deseq2 dds RPKM

updated 6.0 years ago by Michael Love 41k • written 6.0 years ago by harry.horsnell.17 • 0

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4.9k

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deseq2 DDS

updated 6.6 years ago by Michael Love 41k • written 6.6 years ago by rrcutler ▴ 70

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4.7k

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Deseq2 dds confounders

updated 8.4 years ago by Michael Love 41k • written 8.4 years ago by colaneri ▴ 30

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2.2k

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deseq2 rld pheatmap dds

updated 6.5 years ago by Michael Love 41k • written 8.6 years ago by rahel14350 ▴ 10

7 results • Page 1 of 1

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Comment: fgsea significant result by Chris • 0

Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…

Comment: SGSeq: moving toward diffex from SGSeq analysis by Sara • 0

Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…

Answer: Handling multiple differential expression comparisons by Michael Love 41k

It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…

Votes

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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