Bioconductor DDS

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337

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DESeqDataSetFromMatrix dds DESeq2

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by naomi.croft • 0

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467

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Celegans DESeq2 dds Errorinseq_len(length(idx)-1)

updated 17 months ago by James W. MacDonald 65k • written 17 months ago by Enzo.Scifo • 0

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1.1k

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deseq2 cooks distance dds

updated 5.6 years ago by Michael Love 41k • written 5.6 years ago by ipso • 0

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983

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deseq2 dds RPKM

updated 6.0 years ago by Michael Love 41k • written 6.0 years ago by harry.horsnell.17 • 0

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2.2k

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deseq2 rld pheatmap dds

updated 6.4 years ago by Michael Love 41k • written 8.6 years ago by rahel14350 ▴ 10

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4.9k

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deseq2 DDS

updated 6.6 years ago by Michael Love 41k • written 6.6 years ago by rrcutler ▴ 70

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4.7k

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Deseq2 dds confounders

updated 8.3 years ago by Michael Love 41k • written 8.3 years ago by colaneri ▴ 30

7 results • Page 1 of 1

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Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

Comment: minfi::read.metharray.exp by clacarion • 0

I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…

Comment: minfi::read.metharray.exp by clacarion • 0

Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…

Votes

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

Answer: Cannabis OrgDb

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