Bioconductor DDS

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2.2k

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deseq2 rld pheatmap dds

updated 6.5 years ago by Michael Love 41k • written 8.6 years ago by rahel14350 ▴ 10

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4.7k

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Deseq2 dds confounders

updated 8.4 years ago by Michael Love 41k • written 8.4 years ago by colaneri ▴ 30

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4.9k

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deseq2 DDS

updated 6.6 years ago by Michael Love 41k • written 6.6 years ago by rrcutler ▴ 70

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996

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deseq2 dds RPKM

updated 6.0 years ago by Michael Love 41k • written 6.0 years ago by harry.horsnell.17 • 0

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1.1k

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deseq2 cooks distance dds

updated 5.7 years ago by Michael Love 41k • written 5.7 years ago by ipso • 0

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475

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Celegans DESeq2 dds Errorinseq_len(length(idx)-1)

updated 17 months ago by James W. MacDonald 65k • written 18 months ago by Enzo.Scifo • 0

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345

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DESeqDataSetFromMatrix dds DESeq2

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by naomi.croft • 0

7 results • Page 1 of 1

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Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k

> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k

For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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Scholar to ATpoint ★ 4.1k