Bioconductor DESeqDataSetFromMatrix

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DESeqDataSetFromMatrix dds DESeq2

updated 22 days ago by James W. MacDonald 63k • written 22 days ago by naomi.croft • 0

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12k

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DESeqDataSetFromMatrix

2.4 years ago • updated 2.3 years ago Gian ▴ 30

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help DESeq2 DESeqDataSetFromMatrix rownames

updated 16 months ago by Sanatan • 0 • written 2.5 years ago by dorina.jamniczky • 0

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3.0k

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deseq2 replicates error DESeqDataSetFromMatrix

updated 4.5 years ago by Michael Love 40k • written 4.5 years ago by Yonatan Amzaleg • 0

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1.8k

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deseq2 deseqdatasetfrommatrix rnaseq affy

updated 4.8 years ago by Michael Love 40k • written 4.8 years ago by matthew.sinton • 0

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DESeq2 deseqdatasetfrommatrix r new version

updated 5.1 years ago by Michael Love 40k • written 5.1 years ago by megannj • 0

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920

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deseq2 DESeqDataSetFromMatrix software error

updated 5.3 years ago by Michael Love 40k • written 5.3 years ago by nazaninhoseinkhan • 0

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deseq2 DESeqDataSetFromMatrix duplicate

updated 5.6 years ago by James W. MacDonald 63k • written 5.6 years ago by Assa Yeroslaviz ★ 1.5k

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deseq2 rnaseq featurecounts DESeqDataSetFromMatrix

updated 5.8 years ago by Michael Love 40k • written 5.9 years ago by bioinf ▴ 10

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deseq2 deseqdatasetfrommatrix deseqdataset

updated 5.8 years ago by Michael Love 40k • written 5.8 years ago by jillian.waters • 0

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rangedsummarizedexperiment deseqdatasetfrommatrix deseq2 tximport

6.0 years ago lirongrossmann ▴ 80

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deseq2 DESeqDataSetFromMatrix

updated 6.2 years ago by Michael Love 40k • written 6.2 years ago by zxy5139 • 0

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DESeqDataSet DESeqDataSetFromMatrix rnaseq deseq2

7.3 years ago ErickF ▴ 40

13 results • Page 1 of 1

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Comment: Exporting DESeq2 filtered results by James W. MacDonald 63k

I am interested to know what part of my response you found rude. I asked nicely that you don't add to ancient posts, said your post isn't r…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

> I can imagine writing a sparse high-dimensional array in HDF5, but I'm still not sure how to implement the part where it is read and imme…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

Not in BioC 3.18. At some point (e.g. in 6 months) they will be deprecated, then 6 months later (i.e. in 1 year) they will be defunct, then…

Comment: Biostrings error at retrieving protein sequences by Hervé Pagès 16k

Yes, but you need to put the clean names back on the AAStringSet object: ``` names(protein_sequences) <- gsub(" .*", "", names(protein_sequ…

Comment: Exporting DESeq2 filtered results by camillab. ▴ 10

thanks! I didn't`t notice that. I will cancel it now!

Votes

Batch Effect in DESeq2, how to control, how to remove it, how to address biological question

A: BiomaRt Arabidopsis genome unavailable

Answer: enrichKEGG

A: Effect of lfcThreshold on p-value in DESeq2

Comment: Mixed up sample info with plotPCA

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