Bioconductor DEGreport

Showing : DEGreport • reset

votes

415

views

limma DEGreport Volcanoplot

updated 11 months ago by Gordon Smyth 48k • written 11 months ago by Mohammad • 0

votes

replies

583

views

DEGseq clusterProfiler DEGreport

12 months ago Rob • 0

vote

replies

2.3k

views

DEGreport

updated 3 months ago by James W. MacDonald 64k • written 14 months ago by marinaw ▴ 20

vote

replies

1.2k

views

BiocGenerics DESeq2 DEGreport RNASeqData DEG

updated 16 months ago by James W. MacDonald 64k • written 16 months ago by Diya • 0

votes

replies

2.8k

views

DESeq2 RNASeq DEGreport

updated 12 months ago by Michael Love 41k • written 2.7 years ago by Giulia ▴ 10

votes

replies

804

views

RNASeqData DEGreport edgeR

2.8 years ago Wuschel ▴ 10

votes

replies

8.4k

views

DEGreport DegPlot

updated 3.5 years ago by Kevin Blighe 3.9k • written 3.5 years ago by kavator ▴ 30

vote

replies

753

views

DEGreport

updated 3.6 years ago by Lorena Pantano ▴ 120 • written 3.6 years ago by kavator ▴ 30

votes

replies

2.2k

views

DEGreport

updated 3.6 years ago by Martin Morgan 25k • written 3.6 years ago by kavator ▴ 30

vote

1.4k

views

DEGreport deseq2

updated 4.7 years ago by Lorena Pantano ▴ 120 • written 4.7 years ago by lqsdau ▴ 10

10 results • Page 1 of 1

Recent ...

Replies

Comment: Why is DMRcate not available for Bioconductor version 3.18? by Daniel E. Weeks ▴ 20

Thank you for the explanation and contacting the DSS package authors.

Comment: Why is DMRcate not available for Bioconductor version 3.18? by shepherl 3.6k

The DSS package authors just need to add `edgeR` to their Suggest of their DESCRIPTION. They have been contacted about it but have not acte…

Answer: GOslim missing GO term by James W. MacDonald 64k

I think it's because that GO term isn't an offspring of any term in the GO slim you are downloading. ``` > ids<- "GO:0002831" > slim <…

Answer: Obtaining rsIDs with ENSG and variant ID information by Robert Castelo ★ 3.0k

You should first and foremost find out what was the human reference genome version from which your dataset was derived. Assuming this was G…

Comment: DESeq2 - groups with biological replicates from the same patient by James W. MacDonald 64k

If by clustering you mean there might be a within-subject correlation, then yes it's a possibility. But you cannot control for that using a…

Votes

Comment: Why is DMRcate not available for Bioconductor version 3.18?

Comment: limma::voom vs edgeR::voomLmFit - when to use?

Answer: limma::voom vs edgeR::voomLmFit - when to use?

Awards • All

Scholar to James W. MacDonald 64k

Scholar to Assa Yeroslaviz ★ 1.5k