Showing : DES • reset
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DESeq2 inconsistent fits depending on model design with interacting factors
des DESeq2
written 20 days ago by ▴ 10
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453
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unreal negative log2fc values
DESeq2 des
updated 14 months ago by 68k • written 14 months ago by • 0
2
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9
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1.6k
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Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
DESeq2 RUVSeq RUVseq BatchEffect DES
updated 16 months ago by 68k • written 16 months ago by • 0
0
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473
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Bioinformatics student
Des DESeq2
updated 16 months ago by • 0 • written 16 months ago by • 0
2
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2
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697
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With DESeq2 "Not full rank" Error with design
DESeq2 DEs
17 months ago feather-W • 0
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817
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Design structure
DESeq2 des
updated 2.8 years ago by 43k • written 2.8 years ago by • 0
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1
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922
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Design Matrix Singularity Error
DES DESIGN
updated 3.0 years ago by 43k • written 3.0 years ago by • 0
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Matrix not full rank (time-series experiment with one group and covariates )
DESeq2 DES
updated 4.7 years ago by 43k • written 4.7 years ago by ▴ 10
8 results • Page 1 of 1
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Comment: Length of 'dimnames' [1] not equal to array extent by Francesco Silvestro • 0
Resolved the error message!
Comment: WGCNA analysis on RNAseq and proteoimcs data by sum31278 • 0
Hi sagigordon, Can you share how you performed WGCNA analysis for proteomics data? Thanks
Comment: European Bioconductor Conference 2023 planning by inadequate.peacock.iiag • 0
I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…
Comment: ROAST compare results with complex design by Gordon Smyth 52k
It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.
Answer: ROAST compare results with complex design by James W. MacDonald 68k
You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…
Votes
Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
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