Showing : DES • reset
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DESeq2 inconsistent fits depending on model design with interacting factors
des DESeq2
written 5 months ago by ▴ 10
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674
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unreal negative log2fc values
DESeq2 des
updated 18 months ago by 68k • written 18 months ago by • 0
2
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9
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1.9k
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Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
DESeq2 RUVSeq RUVseq BatchEffect DES
updated 21 months ago by 68k • written 21 months ago by • 0
0
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655
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Bioinformatics student
Des DESeq2
updated 21 months ago by • 0 • written 21 months ago by • 0
2
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2
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828
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With DESeq2 "Not full rank" Error with design
DESeq2 DEs
22 months ago feather-W • 0
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Design structure
DESeq2 des
updated 3.2 years ago by 43k • written 3.2 years ago by • 0
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1.0k
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Design Matrix Singularity Error
DES DESIGN
updated 3.3 years ago by 43k • written 3.4 years ago by • 0
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Matrix not full rank (time-series experiment with one group and covariates )
DESeq2 DES
updated 5.1 years ago by 43k • written 5.1 years ago by ▴ 10
8 results • Page 1 of 1
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Answer: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k
You may want to look at the coefficients you are trying to estimate with ExploreModelMatrix: https://www.bioconductor.org/packages/relea…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by emily.wolfrum • 0
Hi Gordon, Thanks for the quick reply. The technical or process blank samples I'm referring to are part of a set of quality control sampl…
Answer: Are individual-mouse-based statistics possible in CellChat? by ATpoint ★ 5.0k
Not a Bioconductor package, I commented on the crosspost at https://www.biostars.org/p/9617271/
Answer: DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups by ATpoint ★ 5.0k
apeglm is more cumbersome than ashr as with apeglm the coefficients need to be explicitely available in the resultsNames.So, you need to re…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Martin Morgan 25k
I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…
Votes
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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