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DES
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0
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3
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233
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DESeq2 inconsistent fits depending on model design with interacting factors
des
DESeq2
written 11 weeks ago by
fedor.bezrukov
▴ 10
0
votes
1
reply
514
views
unreal negative log2fc values
DESeq2
des
updated 16 months ago by
James W. MacDonald
68k • written 16 months ago by
Atul K.
• 0
2
votes
9
replies
1.7k
views
Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
DESeq2
RUVSeq
RUVseq
BatchEffect
DES
updated 18 months ago by
James W. MacDonald
68k • written 18 months ago by
Alexandre
• 0
0
votes
1
reply
544
views
Bioinformatics student
Des
DESeq2
updated 18 months ago by
hemantcnaik
• 0 • written 18 months ago by
Sahar
• 0
2
votes
2
replies
747
views
With DESeq2 "Not full rank" Error with design
DESeq2
DEs
19 months ago
feather-W
• 0
0
votes
1
reply
861
views
Design structure
DESeq2
des
updated 2.9 years ago by
Michael Love
43k • written 3.0 years ago by
Devin
• 0
0
votes
1
reply
963
views
Design Matrix Singularity Error
DES
DESIGN
updated 3.1 years ago by
Michael Love
43k • written 3.1 years ago by
mike
• 0
0
votes
1
reply
1.1k
views
Matrix not full rank (time-series experiment with one group and covariates )
DESeq2
DES
updated 4.9 years ago by
Michael Love
43k • written 4.9 years ago by
heikki.sarin
▴ 10
8 results • Page
1 of 1
Recent ...
Replies
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts
by
Michael Love
43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts
by
empty_mt
• 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts
by
Michael Love
43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Votes
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
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