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DES
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0
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3
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265
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DESeq2 inconsistent fits depending on model design with interacting factors
des
DESeq2
written 3 months ago by
fedor.bezrukov
▴ 10
0
votes
1
reply
628
views
unreal negative log2fc values
DESeq2
des
updated 16 months ago by
James W. MacDonald
68k • written 16 months ago by
Atul K.
• 0
2
votes
9
replies
1.8k
views
Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
DESeq2
RUVSeq
RUVseq
BatchEffect
DES
updated 19 months ago by
James W. MacDonald
68k • written 19 months ago by
Alexandre
• 0
0
votes
1
reply
619
views
Bioinformatics student
Des
DESeq2
updated 19 months ago by
hemantcnaik
• 0 • written 19 months ago by
Sahar
• 0
2
votes
2
replies
775
views
With DESeq2 "Not full rank" Error with design
DESeq2
DEs
20 months ago
feather-W
• 0
0
votes
1
reply
891
views
Design structure
DESeq2
des
updated 3.0 years ago by
Michael Love
43k • written 3.0 years ago by
Devin
• 0
0
votes
1
reply
984
views
Design Matrix Singularity Error
DES
DESIGN
updated 3.2 years ago by
Michael Love
43k • written 3.2 years ago by
mike
• 0
0
votes
1
reply
1.1k
views
Matrix not full rank (time-series experiment with one group and covariates )
DESeq2
DES
updated 4.9 years ago by
Michael Love
43k • written 4.9 years ago by
heikki.sarin
▴ 10
8 results • Page
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Answer: How can I correctly use phyloseq with Docker?
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The Bioconductor version must be compatible with the R version. Bioconductor version 3.18 is compatible with R version 4.3. The Dockerfile …
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Your proposed code is correct and will achieve the desired outcome. The boolean filter expression `IFNg & TNFa | IFNg & IL2 | TNFa & IL2` i…
Answer: Install old version of DESeq2
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The Dockerfile that you have provided is appropriate for installing DESeq2 and apeglm from Bioconductor release 3.10, which corresponds to …
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The discrepancy between `final_exp1` and `final_exp2` could arise from several factors, despite matching dimensions. The `identical()` func…
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Hello Luna. The findUORFs function in ORFik identifies upstream open reading frames by extracting and concatenating the sequences of exo…
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Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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