Showing : DES • reset
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DESeq2 inconsistent fits depending on model design with interacting factors
des DESeq2
written 7 weeks ago by ▴ 10
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466
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unreal negative log2fc values
DESeq2 des
updated 15 months ago by 68k • written 15 months ago by • 0
2
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9
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1.7k
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Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
DESeq2 RUVSeq RUVseq BatchEffect DES
updated 17 months ago by 68k • written 17 months ago by • 0
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494
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Bioinformatics student
Des DESeq2
updated 17 months ago by • 0 • written 17 months ago by • 0
2
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2
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723
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With DESeq2 "Not full rank" Error with design
DESeq2 DEs
18 months ago feather-W • 0
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833
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Design structure
DESeq2 des
updated 2.8 years ago by 43k • written 2.9 years ago by • 0
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942
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Design Matrix Singularity Error
DES DESIGN
updated 3.0 years ago by 43k • written 3.0 years ago by • 0
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1.1k
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Matrix not full rank (time-series experiment with one group and covariates )
DESeq2 DES
updated 4.8 years ago by 43k • written 4.8 years ago by ▴ 10
8 results • Page 1 of 1
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Comment: incomplete imputation of missing values with LEA impute() function by Gordon Smyth 53k
Nadia, please tag your question with the name of the package ("LEA") that you are asking about. "impute" is the name of a different Biocond…
Comment: Sharing a collection of datasets in ExperimentHub by Aaron Lun ★ 29k
FYI the **scRNAseq** packages uses a non-ExperimentHub storage platform, see [here](https://github.com/ArtifactDB/gypsum-worker) for more d…
Comment: Error Loading Experiment from SimBenchData Package by ATpoint ★ 4.9k
Is the Seurat package installed? The error somewhat suggests that it could be related, and at https://www.bioconductor.org/packages/release…
Answer: Help with defining groups by Gordon Smyth 53k
Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…
Comment: Sharing a collection of datasets in ExperimentHub by Peter Hickey ▴ 760
The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …
Votes
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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