Showing : DES • reset
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unreal negative log2fc values
DESeq2 des
updated 5 months ago by 67k • written 5 months ago by • 0
2
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9
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999
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Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
DESeq2 RUVSeq RUVseq BatchEffect DES
updated 7 months ago by 67k • written 8 months ago by • 0
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309
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Bioinformatics student
Des DESeq2
updated 8 months ago by • 0 • written 8 months ago by • 0
2
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2
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496
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With DESeq2 "Not full rank" Error with design
DESeq2 DEs
9 months ago feather-W • 0
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680
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Design structure
DESeq2 des
updated 2.1 years ago by 43k • written 2.1 years ago by • 0
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748
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Design Matrix Singularity Error
DES DESIGN
updated 2.3 years ago by 43k • written 2.3 years ago by • 0
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1
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846
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Matrix not full rank (time-series experiment with one group and covariates )
DESeq2 DES
updated 4.0 years ago by 43k • written 4.0 years ago by ▴ 10
7 results • Page 1 of 1
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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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