Bioconductor DESeq

Showing : DESeq • reset

vote

replies

322

views

DESeq2 deseq

10 weeks ago Meme • 0

votes

replies

343

views

deseq DESeq2

updated 4 months ago by ATpoint ★ 4.1k • written 4 months ago by Hugo • 0

votes

replies

526

views

deseq DESeq2

5 months ago georgii.vdovin • 0

votes

385

views

Deseq DESeq2

updated 6 months ago by Michael Love 42k • written 6 months ago by georgii.vdovin • 0

votes

660

views

Z-score RNASeqData Deseq DESeq2

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by khaserdene99 • 0

votes

replies

909

views

DESeq DESeq2

updated 9 months ago by ATpoint ★ 4.1k • written 9 months ago by Abir.khazaal ▴ 10

votes

replies

664

views

DESeq2 apeglm DESeq ApeGLM Ashr

updated 9 months ago by Michael Love 42k • written 9 months ago by Ndimensional ▴ 20

votes

replies

26k

views

deseq deseq2

updated 9 months ago by Erika • 0 • written 9.3 years ago by c.lieftink@nki.nl ▴ 40

8 results • Page 1 of 1

Recent ...

Replies

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.

Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k

From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …

Comment: deseq2 results by ATpoint ★ 4.1k

> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…

Comment: Extremely small p-values using Limma for proteomic data by ATpoint ★ 4.1k

It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …

Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k

For visualization purposes you can draw an horizontal line at the p-value cutoff that meets the experiment-wide FDR cutoff. For instance, i…

Votes

Answer: minfi latest update for EPIC V2 chip

A: Error in DESeqDataSet : some values in assay are not integers

Answer: Cannot connect to ExperimentHub server

Answer: confused with tximport counts abundance using salmon input

Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call

Awards • All

Scholar to Robert Castelo ★ 3.3k

Popular Question to Gyan Prakash Mishra ▴ 10