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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
•
0
Yes, blockLength=200000, and seg=seg.
I am concerned about the inter-feature distance of features. I generated this plot for various bloc…
Answer: Can I trust the differential expression analysis when the two groups overlap on
by
Michael Love
42k
Can you use `vst` instead of `rlog` and increase to 1000 or 2000 genes?
I'm wondering if there's a way to characterize these 7 samples. …
Comment: Can I trust the differential expression analysis when the two groups overlap on
by
BioinfGuru
▴
30
I think I am about to run into the same issue with my data, so I'll be interested to read peoples opinions on this also i.e. when the group…
Answer: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
by
Gordon Smyth
50k
The MDS plot shows that the time points are hugely different and whereas the replicate samples appear very consistent, with very low variat…
Answer: Store output of matchPWM()
by
mat149
▴
70
hitlist<-lapply(irs, FUN = matchPWM, min.score="90%", with.score=TRUE, pwm = pwm)
ot <- endoapply(hitlist, function(x) as(x, "IRanges")) …
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