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DEXseq
•
reset
0
votes
0
replies
41
views
DEXSeq Subsetting pre or post dispersion calculation?
DEXSeq
17 days ago
Ben J
• 0
6
votes
6
replies
382
views
Scaling DEXSeq estimateDispersions for large datasets, glmGamPoi?
DESeq2
glmGamPoi
DEXSeq
5 months ago • updated 21 days ago
jeremymsimon
▴ 20
0
votes
2
replies
160
views
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
DEXSeq
8 weeks ago • updated 7 weeks ago
Ben J
• 0
0
votes
0
replies
160
views
DESXSEQ warning (Fit for gene/exon ENSG0000002121 threw the next warning(s): the matrix is either rank-deficient or indefinite)?
DEXSeq
updated 4 months ago by
Michael Love
39k • written 4 months ago by
barrypraveen
• 0
0
votes
1
reply
221
views
plotDEXSeq error?
DEXSeq
dex
4 months ago
barrypraveen
• 0
1
vote
4
replies
385
views
DEXseq batch removal
DEXSeq
updated 5 months ago by
Alejandro Reyes
★ 1.8k • written 5 months ago by
ta_awwad
▴ 10
0
votes
0
replies
121
views
DEXSeq: mcols(dxd)$fullBetaConv either contains TRUE or NA
DEXSeq
6 months ago
Matthias Munz
▴ 10
0
votes
0
replies
183
views
DEXSeq aggregated genes/exons result in NA values
RNASeq
R
DEXSeq
7 months ago
osieman52
• 0
1
vote
2
replies
295
views
DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscript out of bounds"
DEXSeq
7 months ago
Delta._.43
▴ 20
0
votes
1
reply
343
views
DEXSeq Exon count not working, please help with an alternative like featureCounts
splicing
Exon
featureCounts
subread
DEXSeq
10 months ago
NIK
• 0
0
votes
4
replies
625
views
DEXSeq: samples$sample_id %in% colnames(counts) is not TRUE
DEXSeq
DRIMSeq
updated 10 months ago by
jeroen.gilis
▴ 90 • written 11 months ago by
phoebe1354
• 0
0
votes
5
replies
1.3k
views
DEXSeq - counts from paired reads and unpaired singletons
dexseq
written 4.0 years ago by
maslane
• 0
6
votes
11
replies
1.3k
views
DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FUN(X[[i]], ...) : subscript out of bounds" (DEXSeqDataSetFromHTSeq)
DEXSeq
updated 10 days ago by
EChambers
• 0 • written 11 months ago by
Matthew Thornton
▴ 350
3
votes
2
replies
423
views
DEX-Seq returns Error in FUN(X[[i]], ...) : subscript out of bounds when I use DEXSeqDatasetFromHTseq()
R
DEXSeq
SequenceAnnotation
RNASeqData
12 months ago • updated 11 months ago
Dakarai
▴ 10
1
vote
2
replies
1.5k
views
DEXseq error unable to find an inherited method for function NSBS for signature CompressedIntegerList
Dexseq
updated 7 months ago by
ta_awwad
▴ 10 • written 3.7 years ago by
bruce.hayward
▴ 10
1
vote
15
replies
2.4k
views
DEXSeq: Error in FUN(X[[i]], ...) : subscript out of bounds
dexseq
updated 3 months ago by
Zhuqiang
• 0 • written 5.9 years ago by
cpsosa0006
• 0
16 results • Page
1 of 1
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Comment: Installation of SingleR fails with GCC 8.2.0, Centos 7 - XPtr(Rcpp::Vector<19>::
by
Jovana Maksimovic
▴ 10
I had a similar issue that was fixed by using gcc 9.1.0 instead of our system default 8.2.0.
Comment: SingleR and gcc-8.3.0
by
Jovana Maksimovic
▴ 10
I had a similar error that was fixed by using gcc 9.1.0 module instead of our default 8.2.0.
Comment: how can I do gene differential analysis on data after vst
by
linouhao
▴ 20
Thanks a lot. so do you know when professor Gordon Smyth says 'Differential expression analysis of vst values can be performed by limma-t…
Comment: Help with Error in DiffBind
by
Rory Stark
★ 4.7k
Apologies. The first line should be result <- dba(sampleSheet=samples) I've gone back and edited previous replies to reflect this.
Answer: *** caught segfault *** , cause 'memory not mapped'
by
James W. MacDonald
62k
You are unfortunately running out of RAM. As you note, you could possibly use `frma`, after generating frozen vectors using the `frmaTools`…
Votes
Analyzing RNA-seq data by WGCNA
A: Analyzing RNA-seq data by WGCNA
Comment: Help with Error in DiffBind
WGCNA: Module preservation vs consensus analysis
WGCNA: Module preservation vs consensus analysis
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