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DSS
•
reset
0
votes
0
replies
79
views
DMRfinder findDMRs.r Error - Argument is of length zero
DSS
DMRcaller
19 days ago
Claire
• 0
0
votes
4
replies
458
views
ERROR happens when install "DSS" package
methylationArrayAnalysis
ChAMP
DMP
DSS
3 months ago
16301050225
• 0
2
votes
4
replies
289
views
How to get methylation data in count data format from "Infinium MethylationEPIC BeadChips (Illumina)" idat files
methylationArrayAnalysis
illuminaio
beadarray
DSS
bsseqData
6 months ago
Jojo
• 0
2
votes
0
replies
228
views
DSS : Different results between DMLtest and DMLtest.multifactor
DSS
11 months ago
cer.chloe
▴ 20
1
vote
2
replies
393
views
BUG: `showOneDMR` from DSS package creates wrong axis labels
DSS
20 months ago
vi.hammer
• 0
0
votes
0
replies
229
views
DSS smoothing RRBS and strand collapse
DSS
BSSeq
2.4 years ago
stephanie.rialle
• 0
0
votes
0
replies
373
views
[DSS] callDMR - dis.merge option does not seem to be working
DSS
bug
troubleshooting
callDMR
2.7 years ago
matthew.kearney
• 0
0
votes
1
reply
305
views
Varying results from DSS when specifying different BSobj
DSS
DSS-single
bsseq
updated 2.8 years ago by
James W. MacDonald
60k • written 2.8 years ago by
varunorama
• 0
0
votes
0
replies
291
views
DSS for non-CpG site analysis
DSS
methylation
2.9 years ago
CalM
• 0
0
votes
1
reply
589
views
Using surrogate variables as covariates in WGBS differential methylation calling
dmrseq
sva
DSS
updated 3.2 years ago by
keegan
▴ 60 • written 3.2 years ago by
gjl
• 0
0
votes
0
replies
605
views
DSS DMLTest Prior Estimate of theta dispersion
DSS
dmltest
bayesian
statistics
methylation
4.4 years ago
floriandeckert
▴ 30
0
votes
0
replies
516
views
DSS DMLtest Object features
DSS
DMLtest
4.4 years ago
floriandeckert
▴ 30
0
votes
0
replies
669
views
DSS CpG coverage threshold
DSS
WGBS
coverage
4.9 years ago
floriandeckert
▴ 30
0
votes
1
reply
689
views
DSS DMLtest with different group sizes
DSS
6.0 years ago
aerval
• 0
2
votes
4
replies
1.4k
views
Error: could not find function "DMLtest"
dss
6.4 years ago
kafkaskid
▴ 20
0
votes
2
replies
1.5k
views
Issue with SummarizedExperiment thru DSS::makeBSseqData
DSS
bsseq
summarizedexperiment
6.9 years ago
Tim Peters
▴ 120
0
votes
1
reply
1.0k
views
limma design matrix missing a Date column
limma
DSS
limma
DSS
updated 8.5 years ago by
James W. MacDonald
60k • written 8.5 years ago by
Sabet, Julia A
▴ 180
0
votes
3
replies
1.2k
views
QuasiSeq vs DSS
RNASeq
Cancer
edgeR
DSS
RNASeq
Cancer
edgeR
DSS
updated 9.4 years ago by
Ryan C. Thompson
7.8k • written 9.4 years ago by
Richard Friedman
★ 2.0k
0
votes
6
replies
989
views
limma complex contrast matrix
DSS
DSS
updated 11.4 years ago by
Ina Hoeschele
▴ 620 • written 11.4 years ago by
Prasad Siddavatam
▴ 150
19 results • Page
1 of 1
Recent ...
Replies
Comment: Retrieve gene summary start/end in biomart query
by
rbenel
▴ 20
Hi Mike, I have tried the query without the transcript, and I believe there are cases where I will receive unique transcript start/end si…
Comment: MMDiff2 memory issues
by
e.iich
• 0
running against a similar issue. Have you found any solutions?
Answer: mapToAlignments_issue
by
Hervé Pagès
15k
> I would expect in case of reverse alignment lifted ranges to correspond to position 91-100 of the query sequence. Nope. Local coordinate…
Answer: Problem related to `biomaRt::getBM()` during `R CMD check` execution
by
James W. MacDonald
60k
Does the section in the biomaRt vignette that talks about caching (and using a temp dir) help?
Comment: OPLS-DA: confidence interval for accuracy metric
by
Eddie
• 0
Worked well under pROC. Thank you
Votes
A: EGSEA error during report generation: "only 0's may be mixed with negative subsc
Answer: mapToAlignments_issue
Analysis of peaks generated from Homer using Diffbind
How to select summit size for histone ChiP-Seq in Diffbind
Comment: GSEA with Wikipathways not entirely reproducible
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