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Job: Research scientist in bioinformatics, Sweden
bioinformatics data analysis post doc Job
5.8 years ago mauno.vihinen • 0
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Job: Biostatistics Analyst (80-100%) at NEXUS Personalized Health Technologies, ETH Zurich, Switzerland
job biostatistics bioinformatics data analysis core facility Job
6.4 years ago Michael Prummer • 0
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Job: Post-doctoral Fellowship at BC Cancer Research Center, Vancouver BC
single cell RNA Data analysis Bioinformatics Job
6.4 years ago jmaanaki • 0
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Job: Postdoctoral Research position in the Genomics of Cerebral Palsy (University of Adelaide, Australia)
Cerebral Palsy bioinformatics data analysis Job
8.6 years ago gammyknee ▴ 10
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Where to find open access microbiome data for case-control comparative study?
microbiome data analysis data request
updated 8.7 years ago by ★ 13k • written 8.7 years ago by • 0
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Tutorial for RNA-Seq Data Analysis
rnaseq data analysis tutorial workflows differential gene expression
updated 8.7 years ago by ★ 29k • written 8.7 years ago by • 0
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New to mass spec data analysis
data analysis xcms Tutorial
updated 13 months ago by • 0 • written 8.7 years ago by • 0
7 results • Page 1 of 1
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Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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