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updated 8.7 years ago by
Guido Hooiveld
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written 8.7 years ago by
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written 10.1 years ago by
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Comment: CpGs with genomic positions greater than the chromosome size in EPICv2?
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Joshua Llano
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Thank you for your reply James. I was worried that it was my mistake.
Comment: Improving performance of edgeR and limma while adjusting for multiple confounder
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ATpoint
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If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…
Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species
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Mike Smith
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6.6k
Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …
Answer: Improving performance of edgeR and limma while adjusting for multiple confounder
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Gordon Smyth
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We recommend that you use voomLmFit() instead of voom+lmFit.
We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…
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