Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
Deseq2
•
reset
0
votes
0
replies
14
views
Deseq2. decontXcounts not integers. Useful alternative?
DESeq2
celda
9 hours ago
JalapenoCornbread
• 0
2
votes
9
replies
215
views
Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
DESeq2
RUVSeq
RUVseq
BatchEffect
DES
updated 9 hours ago by
James W. MacDonald
65k • written 17 hours ago by
Alexandre
• 0
0
votes
1
reply
56
views
PCA plot suggestions
DESeq2
PCAtools
updated 15 hours ago by
JKim
• 0 • written 1 day ago by
Aaliya
• 0
0
votes
1
reply
75
views
DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
DESeq2
RNAseq
updated 1 day ago by
Michael Love
41k • written 1 day ago by
kcarey
• 0
1
vote
3
replies
100
views
Different Shrunk Log2FC according with reference
DESeq2
updated 1 day ago by
Michael Love
41k • written 1 day ago by
andrebolerbarros
▴ 20
1
vote
3
replies
130
views
Opposite sign of LFC in count plots of DEGs (DESeq2)
DESeq2
updated 16 hours ago by
James W. MacDonald
65k • written 1 day ago by
winwater0928
• 0
3
votes
1
reply
213
views
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
DESeq2
updated 2 days ago by
Michael Love
41k • written 2 days ago by
i.sudbery
▴ 40
0
votes
8
replies
235
views
DESeq2 output used for PCA plot on R studio
DESeq2
RSTUDIO
PCAtools
updated 1 day ago by
swbarnes2
★ 1.3k • written 2 days ago by
Aaliya
• 0
3
votes
3
replies
169
views
DESeq2 - dispersion estimation when there is none
DESeq2
updated 2 days ago by
Michael Love
41k • written 3 days ago by
WardDeb
• 0
0
votes
4
replies
198
views
Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind
DESeq2
ATACSeq
8 days ago • updated 5 days ago
lonn
• 0
1
vote
2
replies
220
views
How to retrieve detailed regression results from deseq2
DESeq2
15 days ago • updated 6 days ago
Weiqian
▴ 10
0
votes
4
replies
230
views
DEG with low counts
DESeq2
updated 6 days ago by
Michael Love
41k • written 11 days ago by
Rajat
• 0
0
votes
7
replies
387
views
DESeq filtering specific to contrasts
DESeq2
updated 6 days ago by
Michael Love
41k • written 10 weeks ago by
Emma
• 0
6
votes
16
replies
2.3k
views
DESeq2 a lot of genes showing up as differentially expressed that only have 1 sample with any expression
deseq2
updated 2 days ago by
Michael Love
41k • written 4.6 years ago by
hsbio
▴ 10
2
votes
5
replies
700
views
DESeq2 setting significant p-value
DESeq2
updated 6 days ago by
Michael Love
41k • written 5.0 years ago by
Merlin
▴ 10
15 results • Page
1 of 1
Recent ...
Replies
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Awards
• All
Scholar
to
James W. MacDonald
65k
Supporter
to
JKim
• 0
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Chris
• 0
Supporter
to
Jonathan
▴ 10
Locations
• All
France,
16 minutes ago
United States,
29 minutes ago
Australia,
35 minutes ago
Singapore,
1 hour ago
Macao,
1 hour ago
Traffic: 748 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6