Bioconductor ENmix

Showing : ENmix • reset

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2.5k

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ENmix Bioconductor rtracklayer

written 3.2 years ago by lea • 0

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977

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ENmix

written 7.7 years ago by avilella ▴ 10

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660

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ENmix IlluminaHumanMethylationEPICmanifest

updated 24 months ago by shepherl 3.8k • written 24 months ago by Daphna • 0

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691

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ENmix comBat

3.1 years ago joannew • 0

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558

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ENmix

3.2 years ago joannew • 0

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844

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ENmix

updated 3.5 years ago by shepherl 3.8k • written 3.5 years ago by ycding ▴ 10

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593

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ENmix

3.5 years ago mwjnorris ▴ 10

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644

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ENmix

5.2 years ago moldach ▴ 20

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1.1k

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methylation ENmix BMIQ wateRmelon

5.2 years ago moldach ▴ 20

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1.8k

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ENmix combat.mc illumina450k combat sva

7.8 years ago DSP • 0

10 results • Page 1 of 1

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Comment: putting my own expression data in deseq2 by ATpoint ★ 4.1k

> directly from GEOquery I can tell you that GEOquery retrieves array data not appropriate for DESeq2. For anything else make your questi…

Comment: Assist me in determining whether the analysis process using the limma package ha by SSSJec • 0

Thanks for your reply. I understand the principle of adjusted P-values, but I still want to address that issue. The description of the G…

Comment: Why p value inconsistent when using different number of pathway score? by Gordon Smyth 50k

Just a note that fgsea is not classical GSEA. The classical GSEA as described in the Subramanian paper and other papers from the Broad Inst…

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by Chris • 0

Thank you! The resource I use may mispresent the requirement input of fgsea.

Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by alserg ▴ 260

fgsea doesn't require the presence of deferentially expressed genes, it takes as the input the differential expression-based ranking of all…

Votes

Answer: Improving the design matrices vignette in RNAseq123

Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha

Comment: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)

Comment: Why p value inconsistent when using different number of pathway score?

Awards • All

Popular Question to Matthew Ritchie ▴ 1000

Scholar to alserg ▴ 260