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Bioconductor Course, Kenya 2025: Applications Open!
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Maria Doyle
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Maria Doyle
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2.5 years ago • updated 2.4 years ago
Peter Hickey
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shepherl
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EMBO | EMBL Symposium: The Molecular Basis and Evolution of Sexual Dimorphism
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Steve Pederson
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Comment: Complex contrasts for between and within subject comparisons
by
wuwenhui2
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@gordonsmyth Dear Dr. Smyth, in this design, I am interested to extract genes that have different expression profile at any of the time poi…
Comment: edgeR design between and within subjects
by
wuwenhui2
• 0
@luna Hi Aaron, Your explanation is very helpful. If having three time points instead of three cell types measured for each patient, usin…
Comment: Issue when attempting to use output from DECIPHER IDtaxa (pr2 V5) with dada2/phy
by
Daniel
• 0
Two things: - PR2 version 5.0 and above have 9 levels and not 8 (up to version 4.14). So the code should be: > ranks.pr2 <- c("domain",…
Comment: Removing UTR from GTF for gene quantification
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Michael Love
43k
Yes, we need to discourage tagging software packages arbitrarily on Bioconductor support site. This sends emails to the package maintainers…
Comment: Using tximport for kallisto aligned TOIL data
by
Nicholas
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Great, thanks. I have the transcriptome version and the corresponding GTF file for the ENSEMBL transcriptome version. Is there a way to do …
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Comment: Identifying potentially associated gene set to drug response using GSVA
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Comment: Can't post a question?
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
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