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News: Bioconductor Course, Kenya 2025: Applications Open!
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News: Win 1 of 50 free virtual registrations to BioC Asia 2022 (Dec 1-2, 2022)
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News: News: BioCAsia2023 Abstract Submission & Registration Now Open!
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20 months ago Maria Doyle ▴ 100
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2.2 years ago Maria Doyle ▴ 100
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News: Registrations are now open for BioC Asia 2022
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2.6 years ago • updated 2.5 years ago Peter Hickey ▴ 750
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News: Public Calendar of Events
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News: EMBO | EMBL Symposium: The Molecular Basis and Evolution of Sexual Dimorphism
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5.3 years ago EMBL Events • 0
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News: Registrations are now open for BioC Asia 2019
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5.6 years ago Steve Pederson ▴ 170
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Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender by donnycrimson • 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
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DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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