updated 4 months ago by
EvangelinePope
•
0
•
written 4 months ago by
marco.klein1
•
0
0
votes
2
replies
586
views
0
votes
2
replies
885
views
0
votes
2
replies
892
views
updated 22 months ago by
SamGG
▴
360
•
written 22 months ago by
agus_rizzo
•
0
0
votes
0
replies
659
views
22 months ago
agus_rizzo
•
0
1
vote
3
replies
1.3k
views
updated 22 months ago by
SamGG
▴
360
•
written 22 months ago by
agus_rizzo
•
0
1
vote
1
reply
931
views
0
votes
0
replies
1.2k
views
3.8 years ago
hbolouri
•
0
0
votes
2
replies
1.3k
views
3.9 years ago
jakub.savara
•
0
0
votes
0
replies
1.3k
views
4.2 years ago
ismail.ameran
•
0
1
vote
6
replies
2.4k
views
updated 4.9 years ago by
sofie.vangassen
▴
10
•
written 4.9 years ago by
Václav
•
0
0
votes
0
replies
1.8k
views
4.9 years ago
domenico.somma
•
0
0
votes
1
reply
1.5k
views
6.4 years ago
fabrizio.benedetti.82
•
0
0
votes
0
replies
1.8k
views
0
votes
1
reply
1.5k
views
9.1 years ago • updated 9.0 years ago
jeremyeadler
•
0
Recent ...
Replies
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
by
abaed
•
0
Exactly, MDS was computed on logCPM values from `cpm(x, log=TRUE)` after running `calcNormFactors(method="TMMwsp")` on the DGE object. I al…
Answer: GO.db and others package Download failure
by
James W. MacDonald
68k
You didn't get an error. You didn't even get a warning! You simply got a message saying that two (unrelated) packages were not updated. As …
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
by
Gordon Smyth
53k
MDS of what quantity? LogCPM from `cpm()`?
I don't have a definitive answer, but my feeling that is that library size effects are to be ex…
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
by
abaed
•
0
Apologies for not clarifying earlier, you're right: it is a PCA, not an MDS. In local machine, computing the MDS takes quite a long time, P…
Answer: replace cat with message in glmTreat when lfc = 0
by
Gordon Smyth
53k
Yes, I agree that the message should be a `message` rather than `cat` output, and the message is perhaps not needed at all, because anyone …
Votes
Awards
• All
Popular Question to
geneprophet
•
0
Popular Question to
Hervé Pagès
16k
Teacher to
Gordon Smyth
53k
Popular Question to
Marek Gierlinski
▴
30
Locations
• All
The city by the bay, 1 hour ago
United States, 3 hours ago
WEHI, Melbourne, Australia, 3 hours ago
United States, 4 hours ago
San Diego, 5 hours ago
The city by the bay, 1 hour ago
United States, 3 hours ago
WEHI, Melbourne, Australia, 3 hours ago
United States, 4 hours ago
San Diego, 5 hours ago
Traffic: 952 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6