Showing : GAGE package • reset
0
votes
0
replies
494
views
GAGE for non model organism
gage package gage
3.8 years ago melkile26 • 0
1
vote
2
replies
575
views
GAGE analysis with the whole or a subset of matrix
gage gage package gene expression matrix gene set analysis
3.8 years ago atakanekiz ▴ 30
5
votes
7
replies
2.1k
views
Gage package; go.gset() function error: argument "go_id" is missing
gage package error
updated 4.0 years ago by 59k • written 4.0 years ago by ▴ 20
0
votes
2
replies
1.9k
views
Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage gage package pathview rna-seq
updated 10 weeks ago by • 0 • written 4.2 years ago by • 0
2
votes
4
replies
747
views
Can't find gene list for KEGG genesets
kegg geneset genelist gage package
updated 4.8 years ago by 45k • written 4.8 years ago by ▴ 30
1
vote
0
replies
1.0k
views
DESeq2 - GAGE workflow
gage package deseq2
4.8 years ago sup230 ▴ 30
0
votes
2
replies
926
views
How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage gage package
updated 5.5 years ago by ★ 1.5k • written 5.6 years ago by • 0
1
vote
2
replies
890
views
Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R gage package rnaseq pathview
5.8 years ago joanito.liberti • 0
0
votes
1
reply
590
views
Question on Gage
gage package path.ids RNA-Seq
5.8 years ago rl1385 • 0
0
votes
0
replies
619
views
GAGE package statistical tests
t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment
5.9 years ago smt8n • 0
10 results • Page 1 of 1
Recent ...
Replies
Comment: Transcript-level differential expression using DESeq2 by Michael Love 36k
Did you see the part of the vignette where we talk about this? https://bioconductor.org/packages/release/bioc/vignettes/fishpond/inst/doc/…
Comment: Transcript-level differential expression using DESeq2 by Ekta • 0
Hi Michael, thanks for your reply. One more question. If the qvalue (and pvalue) for all DTEs are the same, the Volcano plot will look lik…
Comment: R: problem with running time-series analysis software: Mfuzz by soda ▴ 80
I have solved this problem by myself. My data.frame is not suitable for Mfuzz.
Comment: R: problem with running time-series analysis software: Mfuzz by Kevin Blighe 3.5k
Cross-posted: https://www.biostars.org/p/9524023/
Comment: ROC plot for OPLS-DA by Eddie • 0
Hi, That was helpful. Thank you. How to do the same for the testing data?
Votes
A: lpsymphony compilation trouble
Answer: Robust Multi-array Average could get negative value or not?
Answer: Robust Multi-array Average could get negative value or not?
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Awards • All
Scholar to James W. MacDonald 59k
Scholar to Guido Hooiveld ★ 3.2k
Scholar to Kevin Blighe 3.5k
Scholar to SamGG ▴ 270
Prophet to johnmcma ▴ 10
Locations • All
Russia, 9 minutes ago
Zheng Zhou, 11 minutes ago
Norway, 20 minutes ago
United States, 40 minutes ago
United States, 43 minutes ago
Traffic: 322 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6