Biostar GDCprepare

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530

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tcgabiolinks gdcprepare differential expression

2.6 years ago fawazfebin ▴ 30

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1.2k

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TCGABiolinks GDCprepare

2.8 years ago vm ▴ 30

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902

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TCGAbiolinks GDCprepare error

updated 2.9 years ago by Tiago C. Silva ▴ 210 • written 2.9 years ago by Talip Zengin ▴ 10

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724

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TCGA GDCprepare

3.3 years ago salvocomplicazioni1 • 0

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1.0k

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tcgabiolinks gdcprepare

updated 3.4 years ago by James W. MacDonald 59k • written 3.4 years ago by ansari.sarabio • 0

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480

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tcgabiolinks illegaloperation gdcprepare

4.4 years ago lisa8191 • 0

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1.1k

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gdcprepare tcgabiolinks treatment_type R data extraction

updated 4.9 years ago by Dario Strbenac ★ 1.5k • written 4.9 years ago by newbie • 0

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920

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R tcgabiolinks gdcprepare

5.0 years ago ugandhar.ch1 • 0

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2.7k

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tcgabiolinks tcga tcgadownload gdcprepare gdc

updated 5.1 years ago by Tiago Chedraoui Silva ▴ 260 • written 5.3 years ago by enigmargs • 0

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1.8k

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tcgabiolinks gdcprepare

5.6 years ago sabarinath.chandrasekharan ▴ 10

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808

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tcgabiolinks gdcprepare

updated 5.7 years ago by Tiago C. Silva ▴ 210 • written 5.7 years ago by Mariana Boroni ▴ 10

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Comment: DESeq2, Calculate the size factor by using median-of-ratio by KEREN • 0

Hi Michael, thank you for you reply. My concern here mainly focus on the high variances in samples of condition "mESC_mRNA_WT". I observed…

Comment: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro by Rory Stark ★ 4.4k

I agree the documentation could be clearer -- it took me a while to understand what it said so I could address your issue!

Answer: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro by chrarnold • 0

Thanks a lot for your quick reply, it is very appreciated! Indeed, with your 2 suggested modifications, I can again reproduce the results f…

Answer: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro by Rory Stark ★ 4.4k

The object in the `.rds` file, `sampleMetaData.df`, is already a `DBA` object, with eight samples: > sampleMetaData.df <- readRDS("~/D…

Comment: Variance explained (coefficient of determination) in edgeR by Gemma • 0

Both strategies actually lead to the same results. Resolved, thanks!

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Answer: DESeq2: Extracting Averaged Counts Information from dds and rld

Answer: Variance explained (coefficient of determination) in edgeR

Comment: cellCounts() function floating point error

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