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GDCprepare
•
reset
0
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0
replies
530
views
GDCprepare error in TCGAbiolinks
tcgabiolinks
gdcprepare
differential expression
2.6 years ago
fawazfebin
▴ 30
4
votes
5
replies
1.2k
views
GDCprepare - error
TCGABiolinks
GDCprepare
2.8 years ago
vm
▴ 30
2
votes
2
replies
902
views
TCGAbiolinks GDCprepare error
TCGAbiolinks
GDCprepare
error
updated 2.9 years ago by
Tiago C. Silva
▴ 210 • written 2.9 years ago by
Talip Zengin
▴ 10
1
vote
5
replies
724
views
Issue with TCGAbiolinks package.
TCGA
GDCprepare
3.3 years ago
salvocomplicazioni1
• 0
0
votes
2
replies
1.0k
views
GDCprepare stop working for some unknown reason
tcgabiolinks
gdcprepare
updated 3.4 years ago by
James W. MacDonald
59k • written 3.4 years ago by
ansari.sarabio
• 0
0
votes
0
replies
480
views
Reasoning for illegal operation
tcgabiolinks
illegaloperation
gdcprepare
4.4 years ago
lisa8191
• 0
0
votes
1
reply
1.1k
views
How to get treatment information with TCGAbiolinks?
gdcprepare
tcgabiolinks
treatment_type
R
data extraction
updated 4.9 years ago by
Dario Strbenac
★ 1.5k • written 4.9 years ago by
newbie
• 0
0
votes
3
replies
920
views
TCGA controlled data
R
tcgabiolinks
gdcprepare
5.0 years ago
ugandhar.ch1
• 0
0
votes
2
replies
2.7k
views
Extract gene expression values from GDCprepare object
tcgabiolinks
tcga
tcgadownload
gdcprepare
gdc
updated 5.1 years ago by
Tiago Chedraoui Silva
▴ 260 • written 5.3 years ago by
enigmargs
• 0
0
votes
8
replies
1.8k
views
TCGAbiolinks GDCprepare fails to connect to Biomart web server
tcgabiolinks
gdcprepare
5.6 years ago
sabarinath.chandrasekharan
▴ 10
0
votes
1
reply
808
views
Error during GDCprepare
tcgabiolinks
gdcprepare
updated 5.7 years ago by
Tiago C. Silva
▴ 210 • written 5.7 years ago by
Mariana Boroni
▴ 10
11 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2, Calculate the size factor by using median-of-ratio
by
KEREN
• 0
Hi Michael, thank you for you reply. My concern here mainly focus on the high variances in samples of condition "mESC_mRNA_WT". I observed…
Comment: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro
by
Rory Stark
★ 4.4k
I agree the documentation could be clearer -- it took me a while to understand what it said so I could address your issue!
Answer: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro
by
chrarnold
• 0
Thanks a lot for your quick reply, it is very appreciated! Indeed, with your 2 suggested modifications, I can again reproduce the results f…
Answer: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro
by
Rory Stark
★ 4.4k
The object in the `.rds` file, `sampleMetaData.df`, is already a `DBA` object, with eight samples: > sampleMetaData.df <- readRDS("~/D…
Comment: Variance explained (coefficient of determination) in edgeR
by
Gemma
• 0
Both strategies actually lead to the same results. Resolved, thanks!
Votes
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
Answer: Variance explained (coefficient of determination) in edgeR
Comment: cellCounts() function floating point error
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