13 months ago
Manav
•
0
0
votes
0
replies
460
views
0
votes
0
replies
1.1k
views
3.9 years ago
fawazfebin
▴
60
4
votes
5
replies
2.0k
views
4.2 years ago
vm
▴
30
2
votes
2
replies
1.3k
views
updated 4.2 years ago by
Tiago C. Silva
▴
270
•
written 4.2 years ago by
Talip Zengin
▴
10
1
vote
5
replies
1.3k
views
4.6 years ago
salvocomplicazioni1
•
0
0
votes
2
replies
1.5k
views
updated 4.8 years ago by
James W. MacDonald
63k
•
written 4.8 years ago by
ansari.sarabio
•
0
0
votes
0
replies
694
views
5.8 years ago
lisa8191
•
0
0
votes
1
reply
1.4k
views
updated 6.3 years ago by
Dario Strbenac
★
1.5k
•
written 6.3 years ago by
newbie
•
0
0
votes
3
replies
1.2k
views
6.4 years ago
ugandhar.ch1
•
0
0
votes
2
replies
3.4k
views
updated 6.5 years ago by
Tiago Chedraoui Silva
▴
260
•
written 6.7 years ago by
enigmargs
•
0
0
votes
8
replies
2.3k
views
0
votes
1
reply
1.0k
views
updated 7.1 years ago by
Tiago C. Silva
▴
270
•
written 7.1 years ago by
Mariana Boroni
▴
10
Recent ...
Replies
Comment: DESeq2, results(dds, name = <reference>) interpretation results
by
Rockbar
•
0
When I apply the model.matrix approach for getting the contrasts, the code
> mod_mat <- model.matrix(design(dds), colData(dds))
> CondA.t…
Comment: DESeq2, results(dds, name = <reference>) interpretation results
by
Rockbar
•
0
Yes, I agree, the correct contrast setting is quite challenging. The vignette says
>contrast: a list of 2 character vectors: the names of…
Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
by
Michael Love
40k
Advantage and disadvantage depends on the aim, what you plan to do with them (testing, plots, etc.).
lengthScaledTPM puts back *in* the ge…
Comment: DESeq2, results(dds, name = <reference>) interpretation results
by
James W. MacDonald
63k
No, putting -1 in the design matrix is a cell means model, which is the opposite. If you used `~ Cond + Cond:Time`, you would specify a fac…
Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
by
Christian
•
0
Thank you for the response and apologies for my late reply. I think I´m starting getting the concept now.
The hints with the cqn is quite …
Votes
Awards
• All
Scholar to
James W. MacDonald
63k
Popular Question to
nhaus
•
0
Popular Question to
Bogdan
▴
660
Popular Question to
Michael Love
40k
Popular Question to
Theo
•
0
Locations
• All
United States, just now
United States, 4 minutes ago
United States, 20 minutes ago
United States, 21 minutes ago
India, 25 minutes ago
United States, just now
United States, 4 minutes ago
United States, 20 minutes ago
United States, 21 minutes ago
India, 25 minutes ago
Traffic: 713 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6