Showing : gdcprepare • reset
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Error in GDCDownload and GDCPrepare for TCGA-PAAD Dataset
GDCPrepare GDCDownload
2.7 years ago Manav • 0
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1.9k
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GDCprepare error in TCGAbiolinks
tcgabiolinks gdcprepare differential expression
5.6 years ago fawazfebin ▴ 60
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5
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3.2k
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GDCprepare - error
TCGABiolinks GDCprepare
5.9 years ago vm ▴ 30
2
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2
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1.9k
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TCGAbiolinks GDCprepare error
TCGAbiolinks GDCprepare error
updated 5.9 years ago by ▴ 270 • written 5.9 years ago by ▴ 10
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5
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2.1k
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Issue with TCGAbiolinks package.
TCGA GDCprepare
6.3 years ago salvocomplicazioni1 • 0
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2
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2.5k
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GDCprepare stop working for some unknown reason
tcgabiolinks gdcprepare
updated 6.4 years ago by 68k • written 6.4 years ago by • 0
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Reasoning for illegal operation
tcgabiolinks illegaloperation gdcprepare
7.4 years ago lisa8191 • 0
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1
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2.1k
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How to get treatment information with TCGAbiolinks?
gdcprepare tcgabiolinks treatment_type R data extraction
updated 7.9 years ago by ★ 1.6k • written 7.9 years ago by • 0
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3
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1.7k
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TCGA controlled data
R tcgabiolinks gdcprepare
8.0 years ago ugandhar.ch1 • 0
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4.3k
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Extract gene expression values from GDCprepare object
tcgabiolinks tcga tcgadownload gdcprepare gdc
updated 8.2 years ago by ▴ 260 • written 8.3 years ago by • 0
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8
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3.2k
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TCGAbiolinks GDCprepare fails to connect to Biomart web server
tcgabiolinks gdcprepare
8.7 years ago • updated 8.6 years ago sabarinath.chandrasekharan ▴ 10
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Error during GDCprepare
tcgabiolinks gdcprepare
updated 8.7 years ago by ▴ 270 • written 8.7 years ago by ▴ 10
12 results • Page 1 of 1
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Answer: Typo in the help of lmFit() by Gordon Smyth 52k
Thanks for the heads-up. > The _Details_ in the documentation of lmFit() still says that the default correlation is 0.75 Yes, you're righ…
Comment: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by caroline.zanchi ▴ 10
Thank you ! ![enter image description here][1] In the end I did ```r rn2 <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "GENENAME"…
Answer: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin by James W. MacDonald 68k
The obvious solution is to use cloud computing, which is likely cheaper than getting more RAM for your computer.
Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by James W. MacDonald 68k
``` library(org.Dm.eg.db) rn <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "SYMBOL","FLYBASE") ## ensure no NA values get propaga…
Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0
Thank you for your explanation, that makes sense. Do you have any suggestions on how to deal with this issue? if it is an issue? especially…
Votes
Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
Comment: Check removeBatchEffect effectiveness
Answer: Check removeBatchEffect effectiveness
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