Bioconductor GDCprepare

Showing : GDCprepare • reset

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TCGABiolinks GDCprepare

4.8 years ago vm ▴ 30

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1.5k

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TCGAbiolinks GDCprepare error

updated 4.8 years ago by Tiago C. Silva ▴ 270 • written 4.8 years ago by Talip Zengin ▴ 10

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TCGA GDCprepare

5.2 years ago salvocomplicazioni1 • 0

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tcgabiolinks tcga tcgadownload gdcprepare gdc

updated 7.1 years ago by Tiago Chedraoui Silva ▴ 260 • written 7.3 years ago by enigmargs • 0

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R tcgabiolinks gdcprepare

7.0 years ago ugandhar.ch1 • 0

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gdcprepare tcgabiolinks treatment_type R data extraction

updated 6.9 years ago by Dario Strbenac ★ 1.5k • written 6.9 years ago by newbie • 0

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842

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tcgabiolinks illegaloperation gdcprepare

6.4 years ago lisa8191 • 0

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1.8k

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tcgabiolinks gdcprepare

updated 5.4 years ago by James W. MacDonald 65k • written 5.4 years ago by ansari.sarabio • 0

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tcgabiolinks gdcprepare differential expression

4.6 years ago fawazfebin ▴ 60

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728

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GDCPrepare GDCDownload

20 months ago Manav • 0

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1.2k

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tcgabiolinks gdcprepare

updated 7.7 years ago by Tiago C. Silva ▴ 270 • written 7.7 years ago by Mariana Boroni ▴ 10

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2.6k

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tcgabiolinks gdcprepare

7.6 years ago sabarinath.chandrasekharan ▴ 10

12 results • Page 1 of 1

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Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k

I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?

Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k

If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…

Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…

Answer: meffil.snp.concordance by James W. MacDonald 65k

This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…

Answer: minfi latest update for EPIC V2 chip by James W. MacDonald 65k

Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…

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Answer: How to save the DEXSeq results

Answer: minfi support of illumina Infinium methylationEPIC v2.0

Comment: minfi support of illumina Infinium methylationEPIC v2.0

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Help with running egsea()

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