Bioconductor GDS

Showing : GDS • reset

votes

1.4k

views

genesis gds SeqVarData

updated 4.4 years ago by Stephanie M. Gogarten ▴ 870 • written 4.5 years ago by JT • 0

votes

replies

2.7k

views

genesis pcrelate gds

updated 5.7 years ago by Stephanie M. Gogarten ▴ 870 • written 5.7 years ago by o.giannakopoulou • 0

vote

1.1k

views

genesis pcrrelate gds

updated 6.1 years ago by Stephanie M. Gogarten ▴ 870 • written 6.1 years ago by roll • 0

votes

1.2k

views

GENESIS GWAS GDS

updated 6.2 years ago by zhengx ▴ 30 • written 6.2 years ago by naglemi ▴ 10

votes

1.5k

views

gds SNPRelate BiocParallel

updated 6.6 years ago by zhengx ▴ 30 • written 6.6 years ago by Vinicius Henrique da Silva ▴ 40

votes

replies

1.8k

views

snprelate vcf gds

updated 6.6 years ago by zhengx ▴ 30 • written 6.7 years ago by annat22 • 0

vote

replies

2.1k

views

gwastools gds

7.8 years ago Lna • 0

7 results • Page 1 of 1

Recent ...

Replies

Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0

This makes a lot of sense, thank you very much!

Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0

Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…

Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k

Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…

Comment: Handling Epic Array Data by Melisa Tecik • 0

Thanks a lot for the help. You saved my day

Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k

The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…

Votes

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

Answer: Differene between the Wald and LRT test for time-series gene expression data

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela

Awards • All