Bioconductor GO

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5.0k

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clusterProfiler AnnotationHub GO uniprot

updated 3 months ago by Guido Hooiveld ★ 4.0k • written 3.3 years ago by Alberto • 0

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3.8k

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clusterProfiler GO GO enrichment genesetenrichment

updated 8 weeks ago by jandrade • 0 • written 6.4 years ago by Huang, Lei [BSD] - CRI ▴ 20

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637

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GO biomaRt

updated 10 months ago by James W. MacDonald 65k • written 10 months ago by cstorer • 0

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589

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GO ensembldb

7 months ago • updated 6 months ago Rockbar • 0

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458

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GO EnrichmentBrowser

updated 3 months ago by James W. MacDonald 65k • written 3 months ago by prity6459 • 0

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437

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go DESeq2

updated 7 months ago by James W. MacDonald 65k • written 8 months ago by Alvin • 0

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386

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GO limma CAMERA

updated 3 months ago by Gordon Smyth 50k • written 3 months ago by Tyler Sagendorf ▴ 10

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283

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DNAMethylation GO MethylationArray missMethyl EPICv2

updated 10 weeks ago by belinda.phipson ▴ 40 • written 10 weeks ago by s.malik • 0

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GO KEGG gage pathview

2 days ago danalvoronov ▴ 10

9 results • Page 1 of 1

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Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0

The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180