Bioconductor GOTHiC

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2.5k

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HiTC gothic diffhic HiC

8.7 years ago • updated 8.6 years ago Bogdan ▴ 670

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1.6k

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GOTHiC hic

8.6 years ago Nathan Sheffield ▴ 10

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3.7k

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bioconductor gothic R

updated 8.9 years ago by Vicky_Tche • 0 • written 9.0 years ago by sv380 • 0

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805

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gothic

7.9 years ago manduchi ▴ 10

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993

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GOTHiC

5.6 years ago alongalor ▴ 10

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906

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hic diffhic gothic hicup hic-c

5.4 years ago mictadlo ▴ 10

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1.1k

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GOTHiC software error

9.0 years ago bef22 • 0

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1.5k

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diffhic gothic hicup hic-c hic

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by mictadlo ▴ 10

8 results • Page 1 of 1

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Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by angelathuynh5 • 0

Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…

Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square? by Gordon Smyth 50k

The formula given in the original question is correct and yours is not. Your formula isn't even constrained to be between 0 and 1. Here is …

Comment: Method to find pathways different between 2 groups by Gordon Smyth 50k

sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…

Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k

I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?

Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k

If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…

Votes

Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call

Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu

Answer: Extremely small p-values using Limma for proteomic data

Answer: How to save the DEXSeq results

Answer: minfi support of illumina Infinium methylationEPIC v2.0

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Popular Question to Gyan Prakash Mishra ▴ 10