Bioconductor GOTHiC

Showing : GOTHiC • reset

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1.4k

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diffhic gothic hicup hic-c hic

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by mictadlo ▴ 10

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892

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hic diffhic gothic hicup hic-c

5.4 years ago • updated 5.3 years ago mictadlo ▴ 10

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975

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GOTHiC

5.5 years ago alongalor ▴ 10

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791

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gothic

7.8 years ago manduchi ▴ 10

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1.6k

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GOTHiC hic

8.6 years ago Nathan Sheffield ▴ 10

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2.4k

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HiTC gothic diffhic HiC

8.6 years ago Bogdan ▴ 670

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3.6k

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bioconductor gothic R

updated 8.8 years ago by Vicky_Tche • 0 • written 8.9 years ago by sv380 • 0

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1.1k

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GOTHiC software error

9.0 years ago bef22 • 0

8 results • Page 1 of 1

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Comment: Error in champ.load(): The following specified files do not exist by Basti ▴ 760

The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/

Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k

As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…

Comment: Batch correction and repeated measures by Gordon Smyth 50k

In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…

Comment: Methylation Analysis experiment design using Limma by Gordon Smyth 50k

I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…

Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0

Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…

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Answer: How many of my genes from my gene list are in each KEGG pathway?

Comment: Light difference when using coef vs omit a group when compare 3 groups.

DESeq2 variance transformation error and plot dispersion Estimate

A: DESeq2 variance transformation error and plot dispersion Estimate

ensembl to hgnc symbols creates duplicates

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