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GSE
•
reset
2
votes
3
replies
1.6k
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Filtering the probe set ids from GSE file
geoquery
GSE
5.7 years ago
mahm
▴ 20
3
votes
11
replies
2.4k
views
Filtering Gene Symbols and Sample Description from GSE files of GEO
gene expression
geoquery
GSE
bioconductor
microarray
updated 5.7 years ago by
Sean Davis
21k • written 5.7 years ago by
mahm
▴ 20
0
votes
1
reply
1.3k
views
Analysing microarray raw data: GSEXXXX_non-normalized.txt
lumi
microarray
GSE
updated 6.2 years ago by
Gordon Smyth
50k • written 6.2 years ago by
mkd12
• 0
2
votes
2
replies
1.3k
views
how to obtain differentially expressed genes from a GSE serie
microarray
GSE
6.5 years ago
Salvo88
▴ 20
1
vote
2
replies
1.3k
views
Subsetting GSE data with information from two different slots
GSE
subsetting
microarray
updated 6.5 years ago by
Axel Klenk
★ 1.0k • written 6.5 years ago by
A
▴ 40
0
votes
1
reply
1.4k
views
GEOquery download error
geoquery error message
GEOquery
GSE
GEO
6.7 years ago
Barah
▴ 20
0
votes
3
replies
1.5k
views
GEOquery problems while trying to process GSE soft files
GSE
soft files
GEO data
8.6 years ago
sz
• 0
1
vote
1
reply
1.2k
views
Compare Row.names and ID from GSE datasets
geoquery
GSE
identical
row.names
updated 9.5 years ago by
Sean Davis
21k • written 9.5 years ago by
PyPer
▴ 20
8 results • Page
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Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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