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GTEx
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reset
1
vote
3
replies
1.3k
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Can i perform DEseq2 from 2 different rse objects download from RECOUNT database
DESeq2
recount
GTEx
TCGA
recount3
updated 16 months ago by
ATpoint
★ 4.4k • written 16 months ago by
David
▴ 20
2
votes
2
replies
2.3k
views
Create TPM gene tables/dataframe from ReCount3
recount3
TCGA
GTEx
DESeq2
2.3 years ago
David
▴ 20
2
votes
2
replies
1.4k
views
Gene Selection GTex for DESeq2 Analysis
DESeq2
GTEx
3.6 years ago
Bine
▴ 50
0
votes
1
reply
3.6k
views
Is GTEx age and sex data available via the recount package?
recount
gtex
updated 5.9 years ago by
Leonardo Collado Torres
★ 1.1k • written 5.9 years ago by
abe
• 0
2
votes
2
replies
1.3k
views
Error in ebayes in limma when analyzing GTEx data
limma
voom
gtex
6.4 years ago
mico
• 0
1
vote
2
replies
1.9k
views
DESeq2 for differential gene expression on GTEx dataset
rnaseq
deseq2
gtex
updated 6.8 years ago by
Michael Love
42k • written 6.8 years ago by
vikram
• 0
2
votes
0
replies
4.1k
views
Tutorial:
BoF Bioc2017: Analyzing publicly available cancer genomics data from GTEx and TCGA with Bioconductor
public data
TCGA
GTEx
Tutorial
7.1 years ago
shepherl
4.0k
7 results • Page
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Comment: Question on performing ANOVA-like analysis using limma
by
Gordon Smyth
51k
What does `sampleid` represent? If you use duplicateCorrelation(), then the blocking factor should be subject, it isn't clear from your que…
Answer: Question on performing ANOVA-like analysis using limma
by
Gordon Smyth
51k
In time course experiments such as this, it is essential to account for baseline variability between subjects, so the second analysis given…
Comment: AffylmGUI does not start wit R 4.4.1
by
Gordon Smyth
51k
Glad to hear that you have figured it out. Your experience might help other people with limmaGUI or affylmGUI on MacOS as well.
Answer: rtracklayer accessing UCSC data table not working
by
James W. MacDonald
67k
The track argument is deprecated now, so you can omit it. ``` > tbl.rmsk <- getTable(ucscTableQuery(mySession, table = "rmsk", range = …
Answer: For feline genome
by
James W. MacDonald
67k
This support site is meant to help people with specific questions about using Bioconductor software. There is a [vignette for `ROntoTools`]…
Votes
Comment: AffylmGUI does not start wit R 4.4.1
DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
Comment: Error in GOmeth function of missMethyl when EPICv2 annotation is used
Answer: unable to access Annotationhub latest record
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