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Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2
by
BioinfGuru
▴
30
I would use biomaRt.
This is what happens when annotation occurs to early. If possible I would run the DEG analysis on the original output…
Comment: Volcano plot of scRNA-seq data not "centered"
by
ATpoint
★
4.2k
My comment was generic. If your experiment causes drastic shifts then the situation might be different. The advise is the same: Try to use …
Comment: conumee with Infinium MethylationEPIC v2.0
by
Maximus
•
0
Hi Sole,
If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object?
I tried to create anno…
Comment: Volcano plot of scRNA-seq data not "centered"
by
tjl
•
0
Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…
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