Bioconductor GeneAnswers

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geneanswers

updated 7.4 years ago by Gordon Smyth 50k • written 7.4 years ago by emiliomastriani • 0

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GeneAnswers annotation Arabidopsis GO

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geneanswers metagenome kegg

updated 7.9 years ago by Guangchuang Yu ★ 1.2k • written 9.5 years ago by francesca.defilippis ▴ 100

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goProfiles GeneAnswers goProfiles GeneAnswers

updated 11.3 years ago by Marc Carlson ★ 7.2k • written 11.3 years ago by Jose M Garcia Manteiga ▴ 310

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Network GeneAnswers Network GeneAnswers

11.5 years ago Enrico Ferrero ▴ 10

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Annotation GO oligo GeneAnswers Annotation GO oligo GeneAnswers

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GO GeneAnswers GO GeneAnswers

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GO GeneAnswers GO GeneAnswers

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GO GeneAnswers GO GeneAnswers

updated 12.7 years ago by James W. MacDonald 66k • written 12.7 years ago by Ou, Jianhong ★ 1.3k

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Pathways graph Rredland GeneAnswers Pathways graph Rredland GeneAnswers

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Rgraphviz GeneAnswers Rgraphviz GeneAnswers

updated 13.4 years ago by Manca Marco PATH ▴ 340 • written 13.4 years ago by john herbert ▴ 10

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Answer: Error when running topGO with KS statistic and elim agorithm by James W. MacDonald 66k

You'll probably have to figure this out yourself. That error is coming from a non-exported function called `.sigGroups.elim`, which iterate…

Answer: Cluster columns in Pheatmap by James W. MacDonald 66k

This support site is meant for helping people with Bioconductor packages, and `pheatmap` isn't one of them, so you should be posting on bio…

Comment: Cluster columns in Pheatmap by elefth.pavlos ▴ 40

Hi, You mean to take the average expression of each group per gene and plot only 2 columns with averages?

Answer: Normalisation using clinical traits in RNA seq using DESeq2 by ATpoint ★ 4.2k

See the vignette, it's a FAQ: https://bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#why-after-vst-are-there-st…

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Please could you comment on this @rory

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Answer: How to run allelic imbalance in apeglm

Answer: Not able to install any Bioconductor 3.18 package [unable to access index]

Answer: Documenting resources in an `ExperimentHub` package?

Answer: Not able to install any Bioconductor 3.18 package [unable to access index]

Seurat/DESeq2 - single cell RNA-seq differential expression

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