Bioconductor GeneSet

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1.1k

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geneset GeneSetEnrichment msigdb

19 months ago Seongsu • 0

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2.1k

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gseGO GeneSet clusterProfiler GeneSetEnrichment

updated 2.4 years ago by James W. MacDonald 68k • written 2.4 years ago by manuelsokolov • 0

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3.7k

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singscore GSVA GSEA subtypes geneset

updated 4.9 years ago by Dharmesh D Bhuva • 0 • written 6.7 years ago by Pietro ▴ 40

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1.5k

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GSVA geneset RNASeq TCGA subtypes

6.9 years ago Pietro ▴ 40

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2.7k

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kegg geneset genelist gage package

updated 8.3 years ago by Gordon Smyth 53k • written 8.3 years ago by sup230 ▴ 30

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gseabase geneset

updated 8.8 years ago by Martin Morgan 25k • written 8.8 years ago by siajunren • 0

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1.7k

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cummerbund readcufflinks geneset

9.9 years ago alessio.stevano • 0

7 results • Page 1 of 1

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Answer: mzR-Rcpp compiler version issue by Laurent Gatto 1.6k

There are two issues here. First, a warning about mzR, that you can safely ignore. It tells you that mzR was compiled using a different …

Comment: Identifying differentially expressed genes in individual samples from a large co by jamie.gearing ▴ 60

Great. Yes, something descriptive is probably good enough, even if the p-values themselves are not so rigorous. Thanks very much Gordon!

Comment: Co-occurrence Network Analysis between Algae and Bacteria by Stefano Mangiola ▴ 40

Just a placeholder, that we are extending `sccomp` to co-occurrence analyses. Yours could be a good use-case to test first. We will be in t…

Answer: DESeq2 design for haplotype MPRA by aimesd808 • 0

I appreciate you telling me about this. Now it's crystal plain to me. Publish this: https://support.bioconductor.org/p/9162649/ [fnf][1] …

Answer: Extract snp information from genomic regions with biomaRt -> "oaries_snp" by Kevin Blighe ★ 4.0k

My sincere apologies that my colleagues had ignored your question. The error occurs because the "chromosomal_region" filter is not valid…

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Answer: Identifying differentially expressed genes in individual samples from a large co

Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction

Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif

Comment: Error installing Seqinfo

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