Bioconductor GeneSet

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753

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geneset GeneSetEnrichment msigdb

12 months ago • updated 11 months ago Seongsu • 0

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1.7k

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gseGO GeneSet clusterProfiler GeneSetEnrichment

updated 20 months ago by James W. MacDonald 68k • written 20 months ago by manuelsokolov • 0

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3.2k

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singscore GSVA GSEA subtypes geneset

updated 4.2 years ago by Dharmesh D Bhuva • 0 • written 6.0 years ago by Pietro ▴ 40

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1.3k

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GSVA geneset RNASeq TCGA subtypes

6.2 years ago Pietro ▴ 40

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2.3k

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kegg geneset genelist gage package

updated 7.6 years ago by Gordon Smyth 52k • written 7.6 years ago by sup230 ▴ 30

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1.9k

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gseabase geneset

updated 8.2 years ago by Martin Morgan 25k • written 8.2 years ago by siajunren • 0

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1.6k

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cummerbund readcufflinks geneset

9.2 years ago alessio.stevano • 0

7 results • Page 1 of 1

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Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

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Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

What is the cheapest day to fly on American Airlines? {Ask_Expert}

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