Showing : GeneSet • reset
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How to make GSEAplot with chip set
geneset GeneSetEnrichment msigdb
21 months ago Seongsu • 0
0
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1
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2.3k
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How to Load a Molecular Signature Database into clusterProfiler gseGO?
gseGO GeneSet clusterProfiler GeneSetEnrichment
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
2
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4
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3.8k
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Are singscore scores comparable between gene sets?
singscore GSVA GSEA subtypes geneset
updated 5.0 years ago by • 0 • written 6.9 years ago by ▴ 40
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1.6k
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Tumor subtype classification when genes of gene set are missing from samples - GSVA approach
GSVA geneset RNASeq TCGA subtypes
7.0 years ago Pietro ▴ 40
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4
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2.9k
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Can't find gene list for KEGG genesets
kegg geneset genelist gage package
updated 8.4 years ago by 53k • written 8.4 years ago by ▴ 30
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2
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2.3k
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Question on GeneSetCollection in GSEABase
gseabase geneset
updated 9.0 years ago by 25k • written 9.0 years ago by • 0
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1.8k
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Problems in building Cummerbundcuff Database
cummerbund readcufflinks geneset
10.1 years ago alessio.stevano • 0
7 results • Page 1 of 1
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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice by Gordon Smyth 53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
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Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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