Bioconductor GeneSet

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geneset GeneSetEnrichment msigdb

9 months ago Seongsu • 0

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1.5k

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gseGO GeneSet clusterProfiler GeneSetEnrichment

updated 17 months ago by James W. MacDonald 67k • written 17 months ago by manuelsokolov • 0

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singscore GSVA GSEA subtypes geneset

updated 4.0 years ago by Dharmesh D Bhuva • 0 • written 5.8 years ago by Pietro ▴ 40

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1.2k

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GSVA geneset RNASeq TCGA subtypes

6.0 years ago Pietro ▴ 40

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2.2k

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kegg geneset genelist gage package

updated 7.4 years ago by Gordon Smyth 52k • written 7.4 years ago by sup230 ▴ 30

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gseabase geneset

updated 7.9 years ago by Martin Morgan 25k • written 8.0 years ago by siajunren • 0

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1.6k

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cummerbund readcufflinks geneset

9.0 years ago alessio.stevano • 0

7 results • Page 1 of 1

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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k

R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…

Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0

Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…

Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0

EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…

Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

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A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

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