Bioconductor GeneSet

Showing : GeneSet • reset

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1.1k

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geneset GeneSetEnrichment msigdb

20 months ago Seongsu • 0

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2.2k

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gseGO GeneSet clusterProfiler GeneSetEnrichment

updated 2.4 years ago by James W. MacDonald 68k • written 2.4 years ago by manuelsokolov • 0

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3.7k

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singscore GSVA GSEA subtypes geneset

updated 4.9 years ago by Dharmesh D Bhuva • 0 • written 6.8 years ago by Pietro ▴ 40

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1.6k

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GSVA geneset RNASeq TCGA subtypes

6.9 years ago Pietro ▴ 40

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2.7k

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kegg geneset genelist gage package

updated 8.3 years ago by Gordon Smyth 53k • written 8.3 years ago by sup230 ▴ 30

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2.2k

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gseabase geneset

updated 8.9 years ago by Martin Morgan 25k • written 8.9 years ago by siajunren • 0

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1.8k

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cummerbund readcufflinks geneset

10.0 years ago alessio.stevano • 0

7 results • Page 1 of 1

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Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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