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HTSeq
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1.2k
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DEXSeqDataSet object DEXSeqDataSetFromHTSeq Error: line number did not have 3 elements
DEXSeq
HTSeq
R
2.2 years ago • updated 2.1 years ago
yr542
• 0
1
vote
6
replies
1.7k
views
low counts from microRNA seq
DESeq2
microRNA
HTSeq
2.8 years ago
abhay.kanodia
• 0
0
votes
1
reply
1.3k
views
Error in DESeqDataSetFromHTSeqCount
DESeq2
RNA-seq
HTseq
DESeqDataSetFromHTSeqCount
updated 2.9 years ago by
Michael Love
43k • written 2.9 years ago by
abhay.kanodia
• 0
0
votes
2
replies
1.2k
views
RNA-Seq Reads Count
DESeq2
htseq
DEGseq
RNASeq
read
updated 3.0 years ago by
Michael Love
43k • written 3.0 years ago by
CP
• 0
0
votes
2
replies
1.6k
views
Problems while installing HTSeqGenie and gmapR
software error
HTSeq
installation
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
eric33150
• 0
12
votes
4
replies
5.2k
views
differential expression analysis of htseq data with edgeR/voom
voom
htseq
edgeR
limma
RNASeq123
updated 6.8 years ago by
Gordon Smyth
53k • written 8.4 years ago by
wd
▴ 30
0
votes
1
reply
1.9k
views
counting with htseq script in DEXSeq
DEXSeq
dexseq_count
htseq
8.7 years ago
mat.lesche
▴ 110
1
vote
6
replies
2.4k
views
Error: could not find function "HTSeqCounts"
HTSeq
HTSeqCounts
Could not find function
DEXSeq
updated 9.5 years ago by
Martin Morgan
25k • written 9.5 years ago by
sakura.nussbaum
▴ 10
8 results • Page
1 of 1
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Comment: Interpretation of output of AffyRNAdeg and hist commands
by
debasainalsa
• 0
When working with AffyRNAdeg output it helps to think of the table like browsing a HEYTEA Menu each row shows a feature of your slides and …
Comment: DESeq2 for candidate gene analysis
by
piffelpaff
▴ 20
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis
by
Michael Love
43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Votes
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
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