Bioconductor HTSeq

Showing : HTSeq • reset

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DEXSeq HTSeq R

2.3 years ago • updated 2.2 years ago yr542 • 0

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DESeq2 microRNA HTSeq

2.9 years ago abhay.kanodia • 0

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DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount

updated 3.0 years ago by Michael Love 43k • written 3.0 years ago by abhay.kanodia • 0

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DESeq2 htseq DEGseq RNASeq read

updated 3.1 years ago by Michael Love 43k • written 3.1 years ago by CP • 0

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software error HTSeq installation

updated 5.8 years ago by Martin Morgan 25k • written 5.8 years ago by eric33150 • 0

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voom htseq edgeR limma RNASeq123

updated 6.9 years ago by Gordon Smyth 53k • written 8.5 years ago by wd ▴ 30

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DEXSeq dexseq_count htseq

8.8 years ago mat.lesche ▴ 110

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 9.6 years ago by Martin Morgan 25k • written 9.6 years ago by sakura.nussbaum ▴ 10

8 results • Page 1 of 1

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Comment: upstream git branches of bioc-release by TrentonCollier99 • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Comment: upstream git branches of bioc-release by Jeroen ▴ 10

OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.

Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k

I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```

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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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