Bioconductor HTSeq

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1.3k

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DEXSeq HTSeq R

2.4 years ago • updated 2.3 years ago yr542 • 0

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1.8k

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DESeq2 microRNA HTSeq

3.0 years ago abhay.kanodia • 0

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1.3k

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DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount

updated 3.1 years ago by Michael Love 43k • written 3.1 years ago by abhay.kanodia • 0

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1.3k

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DESeq2 htseq DEGseq RNASeq read

updated 3.1 years ago by Michael Love 43k • written 3.2 years ago by CP • 0

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1.6k

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software error HTSeq installation

updated 5.8 years ago by Martin Morgan 25k • written 5.8 years ago by eric33150 • 0

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5.3k

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voom htseq edgeR limma RNASeq123

updated 7.0 years ago by Gordon Smyth 53k • written 8.5 years ago by wd ▴ 30

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2.1k

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DEXSeq dexseq_count htseq

8.8 years ago mat.lesche ▴ 110

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2.5k

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 9.7 years ago by Martin Morgan 25k • written 9.7 years ago by sakura.nussbaum ▴ 10

8 results • Page 1 of 1

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Comment: blockwiseModule crashes in the end and doesn't generate modules by gexose2839 • 0

Sounds good. @[time][1] [1]: https://timeduration.github.io

Comment: PFAM formats changed - is it still possible to use this with ISA? by TikTsokaasocissalpc • 0

For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…

Answer: segfault in edgeR glmQLFit by Gordon Smyth 53k

Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. The prob…

Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by aqeel • 0

Discover the pinnacle of Brazilian Jiu Jitsu gear at [Dragon][1] GI. [1]: https://dragongi.com/

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k

I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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