Bioconductor HTSeq

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988

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DEXSeq HTSeq R

19 months ago • updated 18 months ago yr542 • 0

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1.4k

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DESeq2 microRNA HTSeq

2.3 years ago • updated 2.2 years ago abhay.kanodia • 0

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1.1k

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DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount

updated 2.3 years ago by Michael Love 43k • written 2.4 years ago by abhay.kanodia • 0

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1.1k

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DESeq2 htseq DEGseq RNASeq read

updated 2.4 years ago by Michael Love 43k • written 2.4 years ago by CP • 0

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1.4k

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software error HTSeq installation

updated 5.1 years ago by Martin Morgan 25k • written 5.1 years ago by eric33150 • 0

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5.0k

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voom htseq edgeR limma RNASeq123

updated 6.2 years ago by Gordon Smyth 52k • written 7.8 years ago by wd ▴ 30

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1.8k

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DEXSeq dexseq_count htseq

8.1 years ago mat.lesche ▴ 110

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2.3k

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 8.9 years ago by Martin Morgan 25k • written 8.9 years ago by sakura.nussbaum ▴ 10

8 results • Page 1 of 1

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Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Benjamin ▴ 20

I have received a response from Ensembl regarding the items I have listed above. I wanted to post it here and will continue to post update…

Answer: Error in cnetplot by Guido Hooiveld ★ 4.1k

Unfortunately you did not show how you generated your input data (the object `enrichment`), nor did you show the output from `sessionInfo()…

Answer: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

I think this is because Ensembl can assign different Gene IDs to "the same gene" if it is found both on a standard chromosome and a scaffol…

Votes

Answer: Explannation for ROAST results

Comment: Limma comparing gene expression between base line and one treatment

Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?

clusterProfiler-GO enrichment Error

A: Machine learning in R book

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