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HTSeq
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reset
0
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2
replies
951
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DEXSeqDataSet object DEXSeqDataSetFromHTSeq Error: line number did not have 3 elements
DEXSeq
HTSeq
R
18 months ago • updated 17 months ago
yr542
• 0
1
vote
6
replies
1.4k
views
low counts from microRNA seq
DESeq2
microRNA
HTSeq
2.2 years ago
abhay.kanodia
• 0
0
votes
1
reply
1.0k
views
Error in DESeqDataSetFromHTSeqCount
DESeq2
RNA-seq
HTseq
DESeqDataSetFromHTSeqCount
updated 2.2 years ago by
Michael Love
43k • written 2.3 years ago by
abhay.kanodia
• 0
0
votes
2
replies
1.0k
views
RNA-Seq Reads Count
DESeq2
htseq
DEGseq
RNASeq
read
updated 2.3 years ago by
Michael Love
43k • written 2.3 years ago by
CP
• 0
0
votes
2
replies
1.4k
views
Problems while installing HTSeqGenie and gmapR
software error
HTSeq
installation
updated 5.0 years ago by
Martin Morgan
25k • written 5.0 years ago by
eric33150
• 0
12
votes
4
replies
4.9k
views
differential expression analysis of htseq data with edgeR/voom
voom
htseq
edgeR
limma
RNASeq123
updated 6.1 years ago by
Gordon Smyth
52k • written 7.7 years ago by
wd
▴ 30
0
votes
1
reply
1.8k
views
counting with htseq script in DEXSeq
DEXSeq
dexseq_count
htseq
8.0 years ago
mat.lesche
▴ 110
1
vote
6
replies
2.2k
views
Error: could not find function "HTSeqCounts"
HTSeq
HTSeqCounts
Could not find function
DEXSeq
updated 8.8 years ago by
Martin Morgan
25k • written 8.8 years ago by
sakura.nussbaum
▴ 10
8 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 It is correct to use interaction term for patient variability?
by
Bradley
• 0
I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…
Comment: Differential variance analysis - can i use deseq2
by
Michael Love
43k
VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…
Answer: Use of limma R package with targeted proteomics for DE analysis
by
Gordon Smyth
52k
It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…
Comment: WGCNA
by
pammelala304
• 0
Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.
Comment: Does anyone have the command to download all of the core_nt using blast_db_get()
by
Matthew Thornton
▴ 380
Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…
Votes
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: normalizatino of dna methylation EPIC data
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
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