Bioconductor HTSeq

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1.3k

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DEXSeq HTSeq R

2.5 years ago • updated 2.4 years ago yr542 • 0

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1.8k

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DESeq2 microRNA HTSeq

3.1 years ago abhay.kanodia • 0

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1.3k

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DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount

updated 3.2 years ago by Michael Love 43k • written 3.2 years ago by abhay.kanodia • 0

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1.4k

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DESeq2 htseq DEGseq RNASeq read

updated 3.3 years ago by Michael Love 43k • written 3.3 years ago by CP • 0

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1.7k

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software error HTSeq installation

updated 5.9 years ago by Martin Morgan 25k • written 5.9 years ago by eric33150 • 0

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5.4k

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voom htseq edgeR limma RNASeq123

updated 7.1 years ago by Gordon Smyth 53k • written 8.7 years ago by wd ▴ 30

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2.1k

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DEXSeq dexseq_count htseq

9.0 years ago mat.lesche ▴ 110

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2.6k

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 9.8 years ago by Martin Morgan 25k • written 9.8 years ago by sakura.nussbaum ▴ 10

8 results • Page 1 of 1

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Answer: Confirm that OpenStats will not be archived (pryr dependency) by man • 0

The best AI-powered image editor <a href='https://nanobananaart.net>[Nano Banana][1]</a> for both image and text in 2025. [1]: http…

Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0

Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…

Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k

The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …

Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0

Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …

Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0

Thank you!

Votes

Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline

Answer: Confused about the CPM and TMM normalization in edgeR

A: DESeq2 - VST eliminates zero values

Comment: Normalise to a housekeeping gene in DESEq2

Comment: limpa analysis advice

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Popular Question to James W. MacDonald 68k