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HiCDCPlus
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Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCPlus)
HiC
HiCDCPlus
written 7 days ago by
Chaoability
• 0
0
votes
0
replies
454
views
HiCDCPlus differential interaction error
HiCDCPlus
22 months ago
Irene
• 0
0
votes
2
replies
793
views
Java error while running HiCDC overview code
JuicerTools
HiC
HiCDCPlus
Java
Juicer
written 2.0 years ago by
IsMM
• 0
0
votes
1
reply
853
views
HiCDCPlus glm.fit error
HiCDCPlus
updated 2.5 years ago by
merve.sahn
• 0 • written 2.6 years ago by
ehamrud
• 0
0
votes
1
reply
784
views
HiCDCPlus extract_hic_eigenvectors() only works with larger bin sizes (> =250kb )?
HiCDCPlus
updated 2.5 years ago by
merve.sahn
• 0 • written 2.7 years ago by
mlin18
• 0
0
votes
1
reply
1.5k
views
Error in loadFUN(x, seqname, ranges) : trying to load regions beyond the boundaries of non-circular sequence "chr2"
HiCDCPlus
BSgenome.Hsapiens.UCSC.hg38
updated 2.5 years ago by
merve.sahn
• 0 • written 3.0 years ago by
Yue
• 0
0
votes
1
reply
850
views
HiCDCPlus `construct_features` incompatible with BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0 annotation
HiC-DC+
HiCDCPlus
updated 2.5 years ago by
merve.sahn
• 0 • written 3.0 years ago by
Yue
• 0
0
votes
2
replies
1.1k
views
Could I use HiCDCPlus in plant genome?
HiC-DC+
HiCDCPlus
updated 3.4 years ago by
scott
• 0 • written 3.8 years ago by
1037144675
• 0
0
votes
1
reply
1.2k
views
HiCDCPlus with NO replicates
hicdcdiff
HiCDCPlus
updated 3.6 years ago by
merve.sahn
• 0 • written 3.9 years ago by
ta_awwad
▴ 10
0
votes
2
replies
1.8k
views
HicDCplus error, R_Reprotect: only 4 protected items, can't reprotect index -1 (from gi_list_write)
hicd
HiCDCPlus
updated 2.8 years ago by
Michelle
• 0 • written 4.0 years ago by
gamma.jian
▴ 10
0
votes
1
reply
1.0k
views
HiC-DC+ Distance / Model Fitting error when running HiCDCPlus()
HiC-DC+
HiCDCPlus
updated 3.6 years ago by
merve.sahn
• 0 • written 4.4 years ago by
Hannah
• 0
3
votes
7
replies
3.1k
views
Which version of R to use for "HiCDCPlus" "HiC-DC+"
HiC-DC+
HiCDCPlus
BiocParallel
updated 4.8 years ago by
koushik
• 0 • written 5.1 years ago by
Tay
▴ 10
0
votes
3
replies
1.3k
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus
HiC-DC+
HiCcompare
HiC
updated 3.6 years ago by
merve.sahn
• 0 • written 5.1 years ago by
mtS
• 0
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Answer: NUPOP usage
by
shepherl
4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker?
by
fnfgame
• 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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