Bioconductor IntegerList

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r iranges findoverlaps IntegerList List

7.3 years ago • updated 7.1 years ago jian_liangli • 0

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r iranges integerlist DataFrame

updated 7.1 years ago by Jurat Shahidin ▴ 80 • written 7.1 years ago by jian_liangli • 0

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r iranges integerlist

7.2 years ago • updated 7.1 years ago Jurat Shahidin ▴ 80

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r s4vectors integerlist iranges

updated 7.2 years ago by Michael Lawrence 11k • written 7.2 years ago by jian_liangli • 0

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iranges integerlist s4

7.3 years ago Jurat Shahidin ▴ 80

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s4 coercion iranges integerlist

7.3 years ago jian_liangli • 0

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Comment: Why is DMRcate not available for Bioconductor version 3.18? by Daniel E. Weeks ▴ 20

Thank you for the explanation and contacting the DSS package authors.

Comment: Why is DMRcate not available for Bioconductor version 3.18? by shepherl 3.6k

The DSS package authors just need to add `edgeR` to their Suggest of their DESCRIPTION. They have been contacted about it but have not acte…

Answer: GOslim missing GO term by James W. MacDonald 64k

I think it's because that GO term isn't an offspring of any term in the GO slim you are downloading. ``` > ids<- "GO:0002831" > slim <…

Answer: Obtaining rsIDs with ENSG and variant ID information by Robert Castelo ★ 3.0k

You should first and foremost find out what was the human reference genome version from which your dataset was derived. Assuming this was G…

Comment: DESeq2 - groups with biological replicates from the same patient by James W. MacDonald 64k

If by clustering you mean there might be a within-subject correlation, then yes it's a possibility. But you cannot control for that using a…

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Comment: Why is DMRcate not available for Bioconductor version 3.18?

Comment: limma::voom vs edgeR::voomLmFit - when to use?

Answer: limma::voom vs edgeR::voomLmFit - when to use?

Awards • All

Scholar to James W. MacDonald 64k

Scholar to Assa Yeroslaviz ★ 1.5k