Bioconductor IntegerList

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r iranges findoverlaps IntegerList List

8.3 years ago • updated 8.1 years ago jian_liangli • 0

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r iranges integerlist DataFrame

updated 8.1 years ago by Jurat Shahidin ▴ 80 • written 8.1 years ago by jian_liangli • 0

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r iranges integerlist

8.2 years ago Jurat Shahidin ▴ 80

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r s4vectors integerlist iranges

updated 8.2 years ago by Michael Lawrence ★ 11k • written 8.2 years ago by jian_liangli • 0

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iranges integerlist s4

8.3 years ago Jurat Shahidin ▴ 80

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s4 coercion iranges integerlist

8.3 years ago jian_liangli • 0

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Comment: How to annotate a limma Elist raw class object with an annotation file by James W. MacDonald 67k

Oh right. My bad. Good for you though, figuring out that it's ENTREZID, not ENTREZGENE. You did a good job of reading the error message in …

Comment: Differential Expression Genes as Independent Variables by James W. MacDonald 67k

Both true, so a poor suggestion on my part. I am also unclear as to how one would use a single observation (the gene expression measures)…

Answer: How to annotate a limma Elist raw class object with an annotation file by giulia.gentile • 0

Good afternoon, Thank you for your explanation and suggestion to overcome the issue by annotating directly from the genome-wide annotation…

Comment: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Aaron Lun ★ 28k

IIRC loading ~million cells into memory took about 3-5 minutes, but that was with a rather slow filesystem (HDD on a HPC), so YMMV dependin…

Comment: Differential Expression Genes as Independent Variables by Gordon Smyth 52k

Does not allow mixed models. And is for a different purpose to what your aims seem to be: it's purely for prediction rather than for testin…

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Comment: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data

A: DESeq2 One-way ANOVA with 3 sample groups?

conumee with Infinium MethylationEPIC v2.0

A: How to bin a GRanges to small bins

C: How to bin a GRanges to small bins

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Popular Question to mohammedtoufiq91 ▴ 10

Popular Question to Robert Castelo ★ 3.4k