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integerlist
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How can I integrate set of compressedList in multiple list into one without duplication?
r
iranges
findoverlaps
IntegerList
List
5.8 years ago • updated 5.5 years ago
jian_liangli
• 0
2
votes
2
replies
767
views
How to conditionally combine IntegerList in the DataFrame more elegantly?
r
iranges
integerlist
DataFrame
updated 5.5 years ago by
Jurat Shahidin
▴ 70 • written 5.5 years ago by
jian_liangli
• 0
2
votes
4
replies
802
views
How to remove duplicated overlap hit index in IntegerList efficiently [solved] ?
r
iranges
integerlist
5.6 years ago
Jurat Shahidin
▴ 70
5
votes
5
replies
805
views
How to extract out wanted IntegerList more elegantly from nested list?
r
s4vectors
integerlist
iranges
updated 5.6 years ago by
Michael Lawrence
11k • written 5.6 years ago by
jian_liangli
• 0
2
votes
2
replies
707
views
How to detect and replace zero index in IntegerList ?
iranges
integerlist
s4
5.8 years ago
Jurat Shahidin
▴ 70
2
votes
2
replies
709
views
How to coerce CompressedIntegerList as vector?
s4
coercion
iranges
integerlist
5.8 years ago
jian_liangli
• 0
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Comment: Transcript-level differential expression using DESeq2
by
Ekta
• 0
Ok.. thanks for your valuable suggestion and quick replies. I have generated an MA plot using plotMASwish. thanks ekta
Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
by
Michael Love
37k
Sorry, I haven't seen this. Maybe try filtering low count genes? ``` keep <- rowSums(counts(dds) >= 10) >= X dds <- dds[keep,] # then run …
Comment: Transcript-level differential expression using DESeq2
by
Michael Love
37k
To show some extent of the DTE you can plot the LFC of the significant set and their mean count, we have `plotMASwish` to do this. Another…
Comment: Transcript-level differential expression using DESeq2
by
Ekta
• 0
No, the Volcano plot is not essential. I just wanted to show DETs with the help of a plot. Could you suggest a way for it? What are the oth…
Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
by
andrebolerbarros
▴ 10
Hi Michael, I'm using the "contrast" parameter, so I cannot use apeglm with that, as far as I know. The "coef" will not allow me to do eve…
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Comment: Transcript-level differential expression using DESeq2
Comment: Transcript-level differential expression using DESeq2
Answer: how to make a group to apply the data to CAMERA
Answer: how to make a group to apply the data to CAMERA
Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
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