Showing : integerlist • reset
1
vote
12
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1.3k
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How can I integrate set of compressedList in multiple list into one without duplication?
r iranges findoverlaps IntegerList List
5.1 years ago • updated 4.8 years ago jian_liangli • 0
2
votes
2
replies
699
views
How to conditionally combine IntegerList in the DataFrame more elegantly?
r iranges integerlist DataFrame
updated 4.8 years ago by ▴ 70 • written 4.9 years ago by • 0
2
votes
4
replies
744
views
How to remove duplicated overlap hit index in IntegerList efficiently [solved] ?
r iranges integerlist
5.0 years ago • updated 4.9 years ago Jurat Shahidin ▴ 70
5
votes
5
replies
703
views
How to extract out wanted IntegerList more elegantly from nested list?
r s4vectors integerlist iranges
updated 5.0 years ago by 11k • written 5.0 years ago by • 0
2
votes
2
replies
650
views
How to detect and replace zero index in IntegerList ?
iranges integerlist s4
5.1 years ago Jurat Shahidin ▴ 70
2
votes
2
replies
626
views
How to coerce CompressedIntegerList as vector?
s4 coercion iranges integerlist
5.1 years ago jian_liangli • 0
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Answer: Error in makeTxDbFromGFF(txomeInfo$gtf) by Michael Love 34k
I see that tximeta found a linked transcriptome. Can you show this part of your code as well? How did you create the `linkedTxome`?
Comment: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi by Gordon Smyth 43k
You need to start by doing an ordinary paired analysis.
Comment: Recalculated abundance data output table with DEseq2 by Michael Love 34k
Yes, DESeq() then results(). When you print the table it will say MLE. No we don’t have a function to do that.
Comment: Recalculated abundance data output table with DEseq2 by michael.morash • 0
Thanks for getting back to me so quickly. The final comparison we are looking to report are the effects of filtering out low count genes us…
Comment: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi by Field -Ye • 0
Hi Professor Smyth, Thank you for pointing me to your previous publication. I went through the verbal part and found you did pursue the DG…
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Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
Answer: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi
Error in .rowNamesDF<-(x, value = value) :duplicate row.names are not allowed DESeq2
Comment: How to build a GRangesList where each GRanges element is a CDS coordinate of gen
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