Bioconductor List

Showing : List • reset

votes

replies

1.6k

views

R quantile list

2.2 years ago sat • 0

vote

replies

2.7k

views

list save dataframe

updated 2.9 years ago by shepherl 4.1k • written 2.9 years ago by orticello.1160797 ▴ 10

votes

replies

1.9k

views

TCGA tcgabiolinks list reformat

7.4 years ago Guido Hooiveld ★ 4.1k

votes

replies

4.2k

views

dnastringset list stringset

updated 7.9 years ago by Martin Morgan 25k • written 7.9 years ago by vinod.acear ▴ 50

vote

replies

2.7k

views

r iranges findoverlaps IntegerList List

8.8 years ago • updated 8.5 years ago jian_liangli • 0

votes

replies

2.1k

views

coercion data manipulation s4vectors List

8.9 years ago Jurat Shahidin ▴ 80

votes

replies

4.8k

views

deseq2 heatmap clustering file list

updated 9.6 years ago by Michael Love 43k • written 9.7 years ago by chariko • 0

votes

replies

4.1k

views

org.mm.eg.db select list

updated 9.7 years ago by James W. MacDonald 68k • written 9.7 years ago by Assa Yeroslaviz ★ 1.5k

votes

1.3k

views

mirror preferred list

updated 10.0 years ago by Dan Tenenbaum ★ 8.2k • written 10.0 years ago by lejeczek ▴ 10

votes

1.4k

views

Piano List

updated 10.1 years ago by Leif Väremo ▴ 70 • written 10.1 years ago by nonCodingGene ▴ 10

votes

replies

2.3k

views

rle list irange grangeslist

updated 10.1 years ago by Chris Seidel ▴ 80 • written 10.1 years ago by gen ▴ 30

11 results • Page 1 of 1

Recent ...

Replies

Comment: DiffBind - question on the use of filtered or unfiltered input data by sloperun3az • 0

Your essay was beneficial to me, and I found it to be very useful. Thank you for writing it. You give a wealth of knowledge that is not onl…

Comment: compute_fasta_digest does not match Salmon index hash by sloperun3az • 0

The people who are reading your work are not taken into consideration, even though you appear to have a solid understanding of the subject …

Comment: parameters of filterByExpr by Paul Harrison ▴ 110

It might be worth trying limma-voom (or limma-trend) instead of a GLM based method. In our experience these are less prone to this problem.…

Comment: limma::voom vs edgeR::voomLmFit - when to use? by Gordon Smyth 52k

voomLmFit() is in edgeR instead of limma because it needs to call edgeR::glmFit() internally to determine which of the zero observations al…

Comment: limma::voom vs edgeR::voomLmFit - when to use? by Geoff • 0

Just wondering--why was this function put into `edgeR` rather than `limma`? Maybe a bit technical, but it is a little confusing from an out…

Votes

Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

A: what should I do with many zero counts from Salmon quantification

Comment: parameters of filterByExpr

GAlignments Cigar to GRanges

Awards • All

Scholar to James W. MacDonald 68k