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Showing :
JunctionSeq
•
reset
2
votes
2
replies
1.2k
views
Question: Error when running QoRTs for JunctionSeq
DEXSeq
JunctionSeq
RNAseq
QoRTs
3.2 years ago
n.tear
▴ 20
0
votes
1
reply
826
views
JunctionSeq producing strangely large effect sizes for certain exon counting bins
junctionseq
splicing
RNAseq
DEXSeq
4.4 years ago
stuart
▴ 10
0
votes
1
reply
833
views
JunctionSeq Can't produce Summary Plots
JunctionSeq
7.0 years ago
rachelrodgers12
• 0
0
votes
0
replies
827
views
Setting relevel with the JunctionSeq package
junctionseq
relevel
reference
7.2 years ago
Assa Yeroslaviz
★ 1.5k
1
vote
0
replies
943
views
JunctionSeq on multiple conditions
junctionseq
qorts
multiple factor design
relevel
7.2 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.4k
views
JunctionSeq/DEXSeq: Dispersion plot looks strange (but is fine in DESeq2)
deseq2
junctionseq
dexseq
estimatedispersions
rnaseq
updated 7.4 years ago by
Steve Lianoglou
★ 13k • written 7.4 years ago by
l.frank
• 0
0
votes
0
replies
831
views
Problems running JunctionSeq
junctionseq
7.5 years ago
jbono
▴ 10
0
votes
0
replies
845
views
JunctionSeq pairwise contrast with a multi-level treatment
junctionseq
design and contrast matrix
7.6 years ago
stuart
• 0
8 results • Page
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Recent ...
Replies
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Mike Smith
★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data
by
Robert Castelo
★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Comment: deseq2 results
by
ATpoint
★ 4.1k
> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…
Comment: Extremely small p-values using Limma for proteomic data
by
ATpoint
★ 4.1k
It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
Answer: Cannot connect to ExperimentHub server
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to
Robert Castelo
★ 3.3k
Popular Question
to
Gyan Prakash Mishra
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
WouterDeCoster
▴ 130
Scholar
to
Michael Love
42k
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