Bioconductor Limma

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Microarray Normalization affy makecdfenv limma marray Microarray Normalization affy limma

updated 6 days ago by bicecac533 • 0 • written 21.3 years ago by Stephen Moore ▴ 70

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edgeR limma

updated 7 days ago by Gordon Smyth 52k • written 12 days ago by skiaphrene ▴ 10

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limma

updated 9 days ago by Gordon Smyth 52k • written 11 days ago by matthew • 0

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edgeR limma

updated 25 days ago by ATpoint ★ 4.8k • written 26 days ago by robinpaul85 • 0

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CAMERA limma

updated 25 days ago by Gordon Smyth 52k • written 26 days ago by Jay • 0

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Comment: DeSeq Strategies for run to run Replication by Michael Love 43k

You shouldn't need to run `DESeq` on the test data, or manually compute normalization factors. ``` dds_test <- ... # create object dds_te…

Answer: Feature Counts - potential bug with outfile.jcounts by Wei Shi ★ 3.6k

We have made significant changes to how featureCounts annotates junctions detected in read mapping results. These updates are included in t…

Comment: How to perform batch correction on scRNA-seq with confounding plate effects? by 瑞宏 • 0

I would like to share my own understanding: in single-cell RNA sequencing (scRNA-seq), batch correction is solely intended to identify the …

Comment: DiffBind can't find a DAR by Mengjun • 0

Additionally, i checked my bigwig in igv, it shows that the ctrl_1 is more like ko_1, and ctrl_2's track is more like ko_2's track. Did an…

Comment: European Bioconductor Conference 2023 planning by ht • 0

Great news about the European Bioconductor Conference 2023 planning! As someone who enjoys statistical computing and bioinformatics, I'm ex…

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Comment: Differential expression analysis using two TCGA datasets

C: Annotating HTA 2.0 genes

A: Annotating HTA 2.0 genes

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