Bioconductor Linear Models

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deseq2 design matrix multi-confounders linear models rna-seq

updated 4.6 years ago by Michael Love 42k • written 4.6 years ago by mohamedrefaat.1.1992 • 0

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methylation ComBat Linear models batch correction AIC

updated 4.8 years ago by Kevin Blighe ★ 4.0k • written 4.8 years ago by lucasmiranda42 • 0

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944

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Limma R Linear Models

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by christiangriffioen • 0

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931

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ballgown linear models

6.5 years ago Yong Li ▴ 50

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microarray SVA ComBat Linear models Residuals

7.2 years ago DataFanatic ▴ 10

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Comment: Highly DE genes but small count difference within conditions by Michael Love 42k

TPM is not a robust scaling method and can be influenced by changes in global distribution. What do you get with an MA plot. Can you high…

Comment: Highly DE genes but small count difference within conditions by bioshot.com • 0

Hello Michael, thanks for your answer. Yes, I have only 3 samples :(. Dropping sex would remove those genes but at the same time does not i…

Answer: Highly DE genes but small count difference within conditions by Michael Love 42k

Could be due to controlling for sex. You have only three samples? Dropping sex would likely remove such genes as marginally you don't se…

Comment: How to control batch effect if Group and batch are same? by earntodiessaz • 0

These are the types of games that can be found at **[lol beans][1]**. To the fullest extent possible, do it. Before engaging in activities …

Comment: Unevaluated error in ChIPQC combined with BiocParallel by earntodiessaz • 0

Playing video games online at **[Slope][1]** is one of the ways that we get to show off our muscles to all of our new friends that we have …

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GSVA ssGSEA vs. Broad implementation of ssGSEA

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Scholar to ATpoint ★ 4.5k