Showing : MACS2 • reset
0
votes
2
replies
281
views
ChIP-Seq Analysis: Comparing Unannotated Peaks with DESeq2
DESeq2 MACS2
4 months ago • updated 3 months ago vanbelj ▴ 20
0
votes
1
reply
1.0k
views
DiffBind Normalisation between Narrow/Broad Peaks from different peak callers
ChIPSeq SICER2 DiffBind MACS2 offtopic
updated 22 months ago by 62k • written 22 months ago by ▴ 270
0
votes
2
replies
816
views
DiffBind consensus peak set
DiffBind MACS2
updated 2.6 years ago by ★ 4.6k • written 2.6 years ago by • 0
0
votes
2
replies
1.0k
views
DiffBind peaks input file format
DiffBind macs2
updated 4.0 years ago by ★ 4.6k • written 4.1 years ago by • 0
0
votes
2
replies
635
views
Binding matrix creation DiffBind after MACS2 peak call
diffbind macs2
updated 4.9 years ago by ★ 4.6k • written 5.0 years ago by ▴ 10
1
vote
1
reply
1.7k
views
Importing Chip-Seq Peak MACS2 output (.xls) files into DBA object with Diffbind?
diffbind macs2 chip-seq
5.3 years ago chunhong.liu07 ▴ 10
2
votes
3
replies
7.9k
views
DiffBind for ATAC-seq
atac-seq diffbind macs2 macs peak finding
updated 6.0 years ago by ▴ 20 • written 6.6 years ago by ▴ 40
2
votes
4
replies
4.1k
views
diffbind and macs2 output
diffbind macs2
updated 7.3 years ago by ▴ 650 • written 7.3 years ago by ▴ 10
8 results • Page 1 of 1
Recent ...
Replies
Answer: Correct script for featurecounts in Rsubread by Gordon Smyth 47k
See - https://bioconductor.org/packages/release/workflows/vignettes/RnaSeqGeneEdgeRQL/inst/doc/edgeRQL.html#quantifying-read-counts-for-eac…
Comment: Time-course, comparison of two groups by boczniak767 ▴ 720
Thank you very much @gordon-smyth ! I'm very happy that my test for interaction is okay. So I'll try to extend my test experiment to three …
Answer: Handling limma usage after running multiple imputation on the covariates with mi by Gordon Smyth 47k
limma is not designed to be used with multiply imputed covariates, so I can't offer a solution that uses the multiple imputes. Averaging t…
Answer: Correct script for featurecounts in Rsubread by James W. MacDonald 62k
Here's the relevant section from `?featureCounts` ``` Value: A list with the following components: counts: a data matrix c…
Comment: Can I run DESeq2 with SMART-Seq data by Assa Yeroslaviz ★ 1.5k
thanks, the filter is the other way around, true 🙈
Votes
A: gene dispersion, what does it mean?
Answer: gene dispersion, what does it mean?
Limma time series spline help
Answer: Correct script for featurecounts in Rsubread
Comment: Time-course, comparison of two groups
Awards • All
Popular Question to Michael Love 39k
Popular Question to Assa Yeroslaviz ★ 1.5k
Popular Question to Guido Hooiveld ★ 3.6k
Scholar to Gordon Smyth 47k
Popular Question to Robert Castelo ★ 3.0k
Locations • All
Melbourne, Australia, 2 minutes ago
WEHI, Melbourne, Australia, 7 minutes ago
South Korea, 17 minutes ago
Australia, 17 minutes ago
United States, 24 minutes ago
Traffic: 321 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6