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MNN
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3
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6
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4.5k
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Carry over variable features when converting FastMNN SCE object to Seurat object
mnn
batchelor
scrna-seq
seurat
updated 5.7 years ago by
Aaron Lun
★ 29k • written 5.7 years ago by
heir_of_isildur88
• 0
2
votes
2
replies
2.8k
views
Subclustering after MNN batch-correction
batchelor
mnn
scrna-seq
updated 3.5 years ago by
Guandong Shang
▴ 40 • written 6.1 years ago by
heir_of_isildur88
• 0
0
votes
2
replies
1.4k
views
Help with the output from mnnCorrect
mnnCorect
MNN
6.3 years ago
sharvari gujja
▴ 40
2
votes
1
reply
3.0k
views
Batch Corrections (MNN) with TPM values
scRNA-Seq
scater
scran
rna-seq
MNN
updated 6.3 years ago by
Aaron Lun
★ 29k • written 6.3 years ago by
hamza_karakurt
▴ 60
4 results • Page
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Answer: Limma-voom sample weights and impact on DEG numbers
by
fawadsaafir
• 0
<a href="https://deltaexecutoor.com/">delta apk</a> también conocido como Delta X, es una herramienta avanzada para ejecutar scripts perso…
Comment: Error message that there is no package called Biobase
by
DamionLedner99
• 0
thanks for sharing!!! https://cran.r-project.org/
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC
by
Ben
• 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis
by
James W. MacDonald
68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
varying.mastodon.isyn
• 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Votes
Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
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