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MNN
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reset
3
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6
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4.3k
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Carry over variable features when converting FastMNN SCE object to Seurat object
mnn
batchelor
scrna-seq
seurat
updated 5.6 years ago by
Aaron Lun
★ 29k • written 5.6 years ago by
heir_of_isildur88
• 0
2
votes
2
replies
2.7k
views
Subclustering after MNN batch-correction
batchelor
mnn
scrna-seq
updated 3.4 years ago by
Guandong Shang
▴ 40 • written 5.9 years ago by
heir_of_isildur88
• 0
0
votes
2
replies
1.4k
views
Help with the output from mnnCorrect
mnnCorect
MNN
6.2 years ago
sharvari gujja
▴ 40
2
votes
1
reply
2.9k
views
Batch Corrections (MNN) with TPM values
scRNA-Seq
scater
scran
rna-seq
MNN
updated 6.2 years ago by
Aaron Lun
★ 29k • written 6.2 years ago by
hamza_karakurt
▴ 60
4 results • Page
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Answer: NUPOP usage
by
shepherl
4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker?
by
fnfgame
• 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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